Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq139 104 2e-17 seq48 82.4 5e-11 >seq139 Length=8626845 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || |||||||| || || ||| | || ||||||||||||||||| || Sbjct 1930996 TCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAG 1930937 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| ||| | || || || || ||||| ||| | || Sbjct 1930936 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTC 1930877 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || || || Sbjct 1930876 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACG 1930817 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 1930816 AAGATCTGCATC 1930805 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || |||| | || |||| |||||||||||| || Sbjct 1931452 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931393 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||| ||||| || | | || || || ||||| ||| | || Sbjct 1931392 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1931333 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || |||||| Sbjct 1931332 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1931273 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1931272 AAGATCTGCAT 1931262 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || |||||||| || || ||| | || |||| |||||||||||| || Sbjct 1931224 TCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931165 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||| ||||| || | | || || || ||||| ||| | || Sbjct 1931164 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1931105 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || |||||| Sbjct 1931104 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1931045 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1931044 AAGATCTGCAT 1931034 >seq48 Length=15315231 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | ||| |||||||| ||||||||||| ||||| ||| | || Sbjct 866998 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 866939 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| || | || ||||| || Sbjct 866938 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 866879 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | || | | || || || | ||||| || Sbjct 866878 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGT 866819 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || ||||| ||||||||||| Sbjct 866818 CTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322983372163040