Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq347 145 7e-30 seq21 107 2e-18 seq25 102 8e-17 seq10 84.2 2e-11 >seq347 Length=3625835 Score = 145 bits (160), Expect = 7e-30 Identities = 571/883 (65%), Gaps = 20/883 (2%) Strand=Plus/Minus Query 15921 TTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTG 15980 ||| | |||| ||||| ||| | |||| ||| |||||||| |||||| | || | Sbjct 2989075 TTTAACTTGATGTAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAG 2989016 Query 15981 TTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA-T 16039 | || ||||| ||||||||||| || |||| ||||| |||| || | | | || | Sbjct 2989015 TCTTCCCTTCCAATGAAATATTCTCTGTAAAGTCAAATGGATCTTCT-ACCTTGAGCACC 2988957 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || | | |||| || || | |||||| || ||||| ||||| || ||| |||||| Sbjct 2988956 TTGTTAAAACCCAGTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATT 2988897 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 ||| | ||||||| || | || | || | || | | || || | | |||| Sbjct 2988896 AAAGTGCGATTCATTCTGATAAGCTTCATAGACAAGGCCT-TAGTAGGAACTCCTATTCT 2988838 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACT-ATTTAACGGAGGGTTTAATAA 16218 | |||| || | ||| ||||| ||| ||||| | || | | | || || || | Sbjct 2988837 GTCCTAACAGCATTAATAATTATTTCTTTTACT-CTCTGCTCTGAAGGTTTGTGTAGCAG 2988779 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 || || ||||||| || | ||| ||||| || | || || || || | || | || Sbjct 2988778 GTAGTTGAACATTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTC 2988719 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 || |||||||| || || ||||| | |||| ||| || | || ||||| | ||||| Sbjct 2988718 ATTGGAAAATGTGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAA 2988659 Query 16339 TGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTC---ACCGTA 16395 |||||| |||||| || ||| ||| ||||| || || | |||| | ||| Sbjct 2988658 AGAACCAAGAAAGAAGAT-GTTTCTACT---GCAAAAGCTACAACATGCTCTCTATAGTA 2988603 Query 16396 CGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTT 16455 ||| ||| | | | ||||| | | ||||||| | || | | || ||||| Sbjct 2988602 GCTTC--TTTGTCC--CCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGG 2988547 Query 16456 CATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATC 16515 || | || || || | || | | | | |||| || |||| | | | ||| || Sbjct 2988546 AATCATTTCAATGGCCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTC 2988487 Query 16516 TATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAA 16575 | || | |||||||||||| ||| || || |||| || || ||||| |||| || Sbjct 2988486 AGTAAGGAGACTATACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAA 2988427 Query 16576 GCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAAC 16635 ||| | ||||| | || || ||||| | || | | | |||||||| | | Sbjct 2988426 GCAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAGTGCTCCATC-AAGTTTTCTGTCAG 2988368 Query 16636 TATTCCATCGCTAGCTGCAAAAAACGCA-AGTATGTGTTTAATAAAAtttttttCGTTAT 16694 || ||||| || | |||||| || || | ||||| | ||||||| ||| | | | Sbjct 2988367 CATGCCATCACTTGTTGCAAAGAAGTCAGAACATGTGAT--ATAAAATATTTCTTCTCAG 2988310 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 || | ||||| || ||||| || | ||| ||||| || | || |||| Sbjct 2988309 GCAGGAGGGCTCCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAA 2988250 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | ||||| |||| || |||||||||| ||| || || | ||| Sbjct 2988249 AGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATGGTA 2988207 >seq21 Length=21368495 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | | |||||||| | Sbjct 10335247 TTTAAAAATCTGCATCCAAGGTGAAAACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 10335188 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||| ||||| |||||||||||||||||||| ||||| || ||||| |||| Sbjct 10335187 GCTGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTT 10335128 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 10335127 CCATAAAATCAAAGGGATTTTCTG 10335104 >seq25 Length=20042899 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||||| ||||||||| || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 16379 ACCAATCGCTCACC 16392 || | ||||| || Sbjct 6229174 ACAACACGCTCTCC 6229187 >seq10 Length=25572408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 ||| | ||||||| ||||||| ||||| || || ||| | || || || || || | Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACCT-CATCTCTGCTAATAAATTAA 5065022 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || |||||||| || || ||||| | |||| |||| || | | | ||||| | ||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 16340 GAACCAGAAAAGAATATACCTTC 16362 |||||||||||||| |||| ||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTC 5065105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462381866467400