Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq15 1590 0.0 seq5 123 2e-23 seq12 87.8 1e-12 >seq15 Length=22752036 Score = 1590 bits (1762), Expect = 0.0 Identities = 1345/1648 (82%), Gaps = 46/1648 (3%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || ||||||| ||| ||||| |||||||||| | || | |||| | || |||||| Sbjct 18469961 TCCTAGGCAGACCTT-ACTGAAGATATTTGTCAAGAGTATACATTT----TTGCCATCAG 18469907 Query 107200 TCTGGAGTTGAACTTGATGTTC-------TGGATT-------AGTTTGTAATTAAAGGCA 107245 | ||| ||||||||||||||| || ||| ||| ||||| | |||||| Sbjct 18469906 TTTGGCATTGAACTTGATGTTCCTGTGAATGCATTCAGATTTAGTGTGTAACTGAAGGCA 18469847 Query 107246 TTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGA 107301 ||||||||||||||||||| || |||||| |||| |||||||| |||| | |||| Sbjct 18469846 TTTTGTTCTGTCCAAGGATTCCATCTTCCTCCTCCTTCCCTGTGCCTAAACCTTACCTGG 18469787 Query 107302 TCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGT 107361 ||||| || |||| |||||| || |||||||||||||||| |||| | |||| | |||| Sbjct 18469786 TCTCC-ATTCCATAAAGATGTCTTGGTGGAAGAAGAAGCTCTGCCTGCAACATTACCTGT 18469728 Query 107362 GGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTA 107421 ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| || | Sbjct 18469727 GGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTAAGACTTTCTCTCAGATTGA 18469668 Query 107422 AATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGG 107481 ||||||| | || | ||||||||||||||| |||||| || || | ||||||||||| Sbjct 18469667 AATGTGACTTTGAGCACCTGGATCTGGAGTCCAAGGACTTTCAAAGCCGGCACTGTAGGG 18469608 Query 107482 ACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCA 107541 |||| |||||| | ||||||||| ||||||||||| |||||||||||||||||| ||| Sbjct 18469607 ACATCTTGTACGAGTCCCTGAAGCTACCAGCAAAGAGGTCCATCAACTGTTCTGGGGTCA 18469548 Query 107542 CGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAA 107601 |||||||||||||||||||| ||||| || ||| |||||||||| ||||| | Sbjct 18469547 TCCGAGGGGACCAGGAAGCAGTAACTCAGGCTCTTCTAAACAACCTGGAGACCAAGAATA 18469488 Query 107602 AGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCA 107661 ||||| ||| |||| | ||| | ||||||||| | ||||| |||||||||||||| Sbjct 18469487 AGCGGAAACCTTTCACAGACACTGACTACCTCAACCTTACCAGGAACTGTGAGCGCTTCC 18469428 Query 107662 AGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTG 107721 ||| | |||||||||||| ||||||||||||| ||||| ||| ||||||||||||| | Sbjct 18469427 GTGCCAAGAGGAAGTTCATAGAGTTCCCACTGAGCAAAGATGAGTTAGACTTCCCCATCG 18469368 Query 107722 CCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT 107781 | ||||| ||||| |||||||||||||||||||| |||||| | || |||||||| |||| Sbjct 18469367 CATACTCTATGGTAGTCCATGAGAAGATTGAAAATTTTGAAAGACTACTGCGAGCTGTGT 18469308 Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| |||||||||||||| |||| || |||| |||||||||||| |||||||||| Sbjct 18469307 ATGCCCCACAGAACATATACTGCATCCATGTAGATGAGAAGTCCCCAGAAACTTTCAAAG 18469248 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||| |||||||| |||||||| ||||| || ||| ||||||||||||||||| |||| | Sbjct 18469247 AGGCAGTCAAGGCAATTATTTCATGCTTTCCAAATATCTTCATGGCCAGTAAGCTGGTTC 18469188 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 18469187 GGGTGGTTTATGCATCCTGGTCCAGGGTGCAAGCTGACCTGAACTGCATGGAAGACTTGC 18469128 Query 107962 TCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAA 108021 |||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||||| |||| Sbjct 18469127 TCCAGAGCCCAGTGCCGTGGAAATACTTCCTGAATACATGTGGGACAGACTTCCCTATAA 18469068 Query 108022 AGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGT 108081 |||| ||||| |||||||||| |||||||||||||||||| || |||||||||||||||| Sbjct 18469067 AGACTAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAATGGAAAGAACAGTATGGAGT 18469008 Query 108082 CTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACA 108141 | ||| ||||| | |||| |||||||| ||||||||||| | |||||||||||||||| Sbjct 18469007 CAGAGATACCTACCGAGTACAAAAAAACACGCTGGAAATATCATTATGAGGTGACAGACA 18468948 Query 108142 CACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAG 108201 || || || || ||| ||| ||||||||||||||| |||||||||| |||||||| | Sbjct 18468947 CATTGCACATGACAAGCCAGAAAAAGGACCCTCCCCCTAATAATTTACCTATGTTCACGG 18468888 Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261 ||||||||||| |||| || ||||||| ||| ||| ||||||||| || ||||| |||| Sbjct 18468887 GGAATGCCTATATTGTAGCTTCTCGAGACTTCATCCGACATGTCTTCGAGAACCCCAAAT 18468828 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 ||||| |||| |||||||||| |||||||| |||||||| || |||||||||||||||| Sbjct 18468827 CCCAAGAACTGATTGAATGGGTAAAAGACACATATAGCCCTGATGAACACCTCTGGGCCA 18468768 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381 ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| Sbjct 18468767 CCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTGCCACCCCAAGTATGACATCT 18468708 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | ||| || ||||||| || ||||| ||||| |||||| |||| |||||| | | || Sbjct 18468707 CTGACTTGGCTGCCATTGCTAGGCTGGTCAAATGGCAGGACCATGAGGGAAACATGAGTG 18468648 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||||| |||||| |||| ||| |||||||||| | | ||| ||||| ||||| ||| Sbjct 18468647 AAGGGGCACCTTATCCACCTTGCACTGGAATCCACCAGCGGGGTATCTGTATTTATGGGT 18468588 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGA 108561 | ||||||||| | ||||| || ||||||||||| || ||||| |||||||||||||| | Sbjct 18468587 CTGGGGACCTGCATTGGATGCTTCAGAACCATCATCTTTTGGCCAACAAGTTTGACCCAA 18468528 Query 108562 GGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATG 108621 ||||||||||| | || |||||||||||||||||| |||| ||||||||||||||| Sbjct 18468527 AAGTGGATGATAATGCTCTCCAGTGCTTAGAAGAGTACTTACGCTATAAGGCCATCTATG 18468468 Query 108622 GGACTGA------------ACTTTGAG-----CTGC--ACTGTGGGCCAGGGAC-TGTGC 108661 | ||||| ||| |||| ||| ||||||| ||| || ||||| Sbjct 18468467 GTACTGAAATCTGACACACACTATGAGAGAATTTGCTACCTGTGGGTCAGACACTTGTGC 18468408 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGT-GGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 |||| || ||| || | ||| || ||| |||||||| | | | || | ||||||| | Sbjct 18468407 AAACAGGCTCAGAGCTTGCTGAGACAATGTAGGGGTGGGAGTCCA-GGTTCTGGAATCTA 18468349 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||| |||||| |||| || ||| |||| Sbjct 18468348 TGGTATCCCCTAGGGAAAGGGGGTTGCT 18468321 >seq5 Length=32993971 Score = 123 bits (136), Expect = 2e-23 Identities = 569/885 (64%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| ||| || || | || || || || ||||| || | || Sbjct 9424265 CCCCTTAGCAAAGAAGAGGCAGAGTTTCCGCTCGCATATTCTATAGTGGTTCACCACAAA 9424324 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| | || |||| ||| | ||| | || |||||||| | || || | Sbjct 9424325 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 9424384 Query 107808 CACGTGGATGTGAAGTCCC-CAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || ||||| |||||| ||| |||| | | | | || | || |||| ||||| Sbjct 9424385 CATGTGGACAAAAAGTCCGACAGTTCCTTTTTAGGTG-CTGTAATGGGCATTGCATCCTG 9424443 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| || ||||| | ||||| | ||| ||||| ||||| || ||| | | Sbjct 9424444 TTTCAGTAACGTCTTTGTAGCCAGCCGGCTGGAGAATGTGGTGTATGCTTCATGGAGCCG 9424503 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || || ||||| || || ||| | ||| | || |||| | ||||| |||||| Sbjct 9424504 CGTCCAGGCAGACCTCAATTGCATGAAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAG 9424561 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 9424562 TACTTGATAAATCTTTGTGGCATGGATTTTCCTATTAAAACCAACCTGGAAATCGTCAGG 9424621 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTG--AGTCCa 108102 |||||| ||| | |||| | |||| | || |||||| | || | ||| | Sbjct 9424622 AAGCTCAAGTCGTTAATGGGTGAAAACAACCTTGAATCTGAGAAAATGTCAGCCAGTAAA 9424681 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGT--ACCCTACCAG 108157 | ||| | |||||| | || ||||| || | || | ||| | | | || Sbjct 9424682 GAGGAAA--GGTGGAAAAAGCGTTATGAAGTCATCAACGGGAAGCTGACAAACACAGGAG 9424739 Query 108158 CA-AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216 || | | | | ||||| | || | |||||| || |||| | ||||||||||| Sbjct 9424740 CAGACAAAATGCGTCCTCCTCTCGAAAC---ACCCATTTTTTCAGGCAGTGCCTATTTTG 9424796 Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTG 108276 ||| | | | || ||| | |||| ||| || ||| || | | | | Sbjct 9424797 TGGTCAGTAGGAACTATGTGGGATATGTGCTAGGAAATGAAAAAATTCACAAGTTTATGG 9424856 Query 108277 AATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTC 108336 |||||| |||||||| || ||||| || ||| | |||||||||||| |||| | | || Sbjct 9424857 AATGGGCGAAAGACACATACAGCCCTGATGAATATCTCTGGGCCACCATTCAAAG-GATC 9424915 Query 108337 CGTGGA-TGCCTG--GCTCTGTTC-CTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 | || | | |||| || ||| | | ||||| ||| ||| |||| || |||||| | Sbjct 9424916 CCTGAAGTCCCTGGTGCACTGCCCTCAAGCCA---CAAATATGACATGTCTGACATGCAT 9424972 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 | || || ||| | ||||| ||||| || || || ||||| || ||| || ||| Sbjct 9424973 TCGATTGCAAGGTTTGTCAAATGGCACTATTTTGAAGGCGATGTTTCCAAGGGCGCCCCT 9425032 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||||||| || ||||| | | | | || ||| ||||| |||||| || Sbjct 9425033 TACCCACCCTGCGACGGCATCCACGTGCGCTCTGTGTGTGTTTTTGGGGCAGGGGACTTG 9425092 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| | || || || ||| | || || || ||||||||| Sbjct 9425093 AACTGGATGTTACACAAACACCACTTGTTTGCCAATAAGTTTGAC 9425137 >seq12 Length=25310607 Score = 87.8 bits (96), Expect = 1e-12 Identities = 197/288 (68%), Gaps = 16/288 (6%) Strand=Plus/Plus Query 107749 TTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGT 107806 |||| | |||||| |||| | |||| | || |||||| | || | |||||||| Sbjct 2663400 TTGATACATTTGAAAGGCTCTTCAGAGCAATTTACATGCCCC--AAAATGTCTACTGTGT 2663457 Query 107807 CCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-C 107864 |||||||||| |||| || ||| || ||| ||||| || || ||| | |||| | | Sbjct 2663458 TCACGTGGATGAGAAGGCCACAGCTGAATTT-AAAGATGCCGTGAAG-CAATTACTGAGC 2663515 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 |||||||| |||| ||| |||| ||| |||| || || || |||| | ||| Sbjct 2663516 TGCTTCCCAAATGCTTTCCTGGCGTCCAAGATGGTGCCAGTTGTCTATGGCGGAATTTCC 2663575 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGAC----TTGCTCCAGAGCTCAGTGCCATG 107980 || | || |||||||||||||||||| |||| | || | ||| || || || Sbjct 2663576 AGGCTCCATGCTGACCTGAACTGTATGAGAGACCTGGTGGCATCGGAG----GTTCCCTG 2663631 Query 107981 GAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||| || | | ||||| || ||| ||| ||||| | || ||||| Sbjct 2663632 GAAATATGTGATCAATACCTGTGGGCAAGATTTCCCTCTGAAAACCAA 2663679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348173259964266