Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq347 161 1e-34 seq25 120 3e-22 seq21 91.5 1e-13 seq149 89.7 5e-13 >seq347 Length=3625835 Score = 161 bits (178), Expect = 1e-34 Identities = 597/921 (65%), Gaps = 21/921 (2%) Strand=Plus/Minus Query 13902 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13961 |||| ||||| | |||| ||| ||||| || |||||| ||||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 13962 GTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTA 14021 ||| ||||| || |||| |||||||||| | | | | | ||| || | | |||| | Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 14022 GTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCA 14081 ||| | |||||| || || | ||| ||||| || ||||||| | ||||| Sbjct 2988943 GTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCA 2988884 Query 14082 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 14141 | | || || || | || | || || | || || | |||| | ||||| | Sbjct 2988883 TTCTGATAAGCTTCATAGACAAGGCCTTAGT-AGGAACTCCTATTCTGTCCTAACAGCAT 2988825 Query 14142 CGTTTATAATAATCG-TAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAA 14198 | ||||| || | || | || | ||||| | | || | || || | Sbjct 2988824 ---TAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 ||| || | ||| ||||| || ||||||||||| |||||||||| || ||||||| Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | | || |||||||||||| ||| || | || ||||| | || || || || || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14378 |||| | | || ||| ||||| |||| | | |||| | | | |||| ||||| Sbjct 2988647 AGAAGA-TGTTTCTACT---GCAAAAGCTACAACATGCTCTCTATA-GTAGCTTCTTTGT 2988593 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | ||||| | | ||||| || | | || || | | || || ||||||| | Sbjct 2988592 CCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGG 2988533 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | | || | | |||| | || |||| | | | ||| || ||| |||| | |||| Sbjct 2988532 CCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTAT 2988473 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 2988472 ACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTG 2988413 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 || || ||| | || | || ||| ||||| | | || |||||||| | Sbjct 2988412 TAATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTG 2988354 Query 14619 CTGCAAA-AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 |||||| || | || |||| | ||||| |||| || ||| ||| | | Sbjct 2988353 TTGCAAAGAAGTCAGAACATGTGAT--ATAAAATATTTCTTCTCAGGCAGGAGGGCTCCC 2988296 Query 14678 CAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 || | ||| || || || |||||||| || || ||| |||| ||||| ||| ||| Sbjct 2988295 CAGT--GCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAG 2988238 Query 14736 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAG 14795 |||| ||||||||| ||| || || | ||| | ||| ||| | ||||| | | || Sbjct 2988237 CTTTCTTATACATTTGCCAAATATCATGGTATTAATTAGAAAAGATGACAAA-GTGGCAG 2988179 Query 14796 ATGTTTCTTTAAGAATTGGTT 14816 | ||||| | || | ||||| Sbjct 2988178 AGATTTCTCTCAGCAGTGGTT 2988158 >seq25 Length=20042899 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 14346 CTATTAATCGTTCTCC 14361 ||| | || ||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 6227516 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 6227575 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 |||||||| ||||| |||||||| ||||||||||| Sbjct 6227576 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6227610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||||| | | |||||| || |||||||| | |||||||||||||| |||| Sbjct 6231257 CCTT-TCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTA 6231315 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||| || || || || ||||| || || | |||||||| Sbjct 6231316 TGTTTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTG 6231360 >seq21 Length=21368495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 |||||||| |||| || | ||||||||||| || || | | ||||| | | Sbjct 10335245 TAAAAATCTGCATCCAAGGTGAAAACATTATCTGTGGTT-TCCGCCATAACTGCAAAACG 10335187 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| ||||| |||||||||||| || ||||| ||||||| || || ||||| Sbjct 10335186 CTGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 10335127 Query 13975 CATAAAATCAAATGGATTT 13993 |||||||||||| |||||| Sbjct 10335126 CATAAAATCAAAGGGATTT 10335108 >seq149 Length=8240324 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAATTTGC 11699 |||| ||| || |||||||| ||| |||||| | ||| |||| |||| | || Sbjct 3276286 CATCCAAAACTTGAACTTCTTCTGTTTCTGGATAAAAAAATTTATTCACAAATGCTATGG 3276345 Query 11700 GCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACT 11759 || | || ||| || |||| | | |||| | | ||| ||| ||||| | |||||| Sbjct 3276346 GCAATTCAATCACCCTTTTTGAGTTCAAATTTTTCTTTGCCAAAATTAAACATTATAACA 3276405 Query 11760 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 |||||||| || || |||||||||||| | || || |||||| ||||||| Sbjct 3276406 CCAATGTTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATG 3276456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482209886036120