Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq347 226 4e-54 seq10 138 1e-27 seq74 125 9e-24 seq25 120 4e-22 seq21 111 2e-19 seq97 107 2e-18 >seq347 Length=3625835 Score = 226 bits (250), Expect = 4e-54 Identities = 592/889 (67%), Gaps = 17/889 (2%) Strand=Plus/Minus Query 33280 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33339 |||||||||| | | || ||| | || | || || || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 33340 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCA 33399 |||| ||||| || | || ||||| |||| || ||| | || ||||| |||| Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 33400 ATT-CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33458 || ||| | ||||| ||||| |||||||| || || | ||||| | | |||| Sbjct 2988943 GTTTCAGCCTT-AATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885 Query 33459 ATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCA 33518 |||| || || || | | | ||| |||| ||| | || ||| | || ||| Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAACTCCTA-TTCTGTCCTAACAGCA 2988826 Query 33519 TTTGTTATAATAAATCTAACGGTTTCTTCACTC--GGTGGATGTAATAAATGTTTAAACA 33576 || | || || | | || | ||| | || ||| |||| | | || |||| Sbjct 2988825 TTAATAATTATTTCTTTTAC--TCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | | || | || || ||||| |||||| ||||| |||| | ||| || ||||| | Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 |||| || ||||| | || || || || || ||||| || || || || || || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCTGTC 33754 ||||||| |||||||||| || || | || ||||| ||| | | | |||| Sbjct 2988647 AGAAGATGT-TTCTACTGCA---AAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTC 2988592 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| | | |||||||| | |||| ||||||||||| ||| |||| ||||| Sbjct 2988591 CCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGC 2988532 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | |||||| | | |||| ||| ||||||| | ||| || | | |||||||| Sbjct 2988531 CCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATA 2988472 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||||| ||| |||||||| | ||| || ||||| | ||||| || | || || || Sbjct 2988471 CATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGT 2988412 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| |||||| | || | | || || ||||| ||| || |||||||| | Sbjct 2988411 AATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGT 2988353 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 |||||| || | || |||||| |||||||||||| | || || || ||| Sbjct 2988352 TGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCA 2988294 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | | || ||||| || | |||||| || || |||| ||||| || ||||| || || Sbjct 2988293 GTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTT 2988234 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA-ATAACAAA 34162 |||||||| | ||| || ||||| |||| ||| | ||| || ||||| Sbjct 2988233 CTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 138 bits (152), Expect = 1e-27 Identities = 294/435 (68%), Gaps = 13/435 (3%) Strand=Plus/Plus Query 33553 GTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTC 33612 ||| ||||| | ||| | ||||| || | || || || ||||| | ||| || |||| Sbjct 5064950 GTGTATGTAGCAGCTGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTC 5065008 Query 33613 TACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 33672 | ||||| |||| || ||||| ||||| || ||||| | || | || || ||| | | Sbjct 5065009 TGCTAATAAATTAATTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGA 5065068 Query 33673 ATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTC 33732 |||| | | || || || ||||||||||| | ||||| | | ||||||| || Sbjct 5065069 ATATTAATGAAAAAGAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACAT 5065128 Query 33733 TCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33792 |||||||| |||| ||| | ||| || |||||||| |||| Sbjct 5065129 GCTCTCCATT--------TGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTA 5065180 Query 33793 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33852 | |||||| || ||| || |||| || || | | |||| || |||||||| | Sbjct 5065181 CCCAAGGCGTCATTTTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGT 5065240 Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912 |||| || || | |||||||||||||| ||||| |||||||| || || || || | | Sbjct 5065241 AAGTGTCAATAAGGAGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC 5065300 Query 33913 CGTAGA-AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||| |||| || || |||||||| | |||| |||| | | | |||||| Sbjct 5065301 --TAGAGAACA-GAGGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTT 5065357 Query 33972 TCATTCACTATTCCA 33986 ||||||||||| ||| Sbjct 5065358 TCATTCACTATGCCA 5065372 >seq74 Length=12003515 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || |||| | |||| Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 11048244 CTGTTTCTTACACCATA 11048228 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| || || | | || |||||||| |||||| || || | || || | Sbjct 11042971 CATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGGGCTCCAT 11042912 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||||||||| |||| |||||| | ||| || || || || ||||| |||| Sbjct 11042911 AATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGAT 11042852 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || |||| |||||||| ||||| || || |||| ||| | Sbjct 11042851 ACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGTCGATGGC 11042792 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 11042791 GTTTATTTGA 11042782 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || ||||||||||| || |||||| || | || || || || ||||| | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | ||||| || || | | Sbjct 11037062 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACG 11037003 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || ||||| || ||||| || | ||| |||||| | | ||| || ||||||| Sbjct 11037002 CTGCTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 11036943 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 11036942 AGGCTCCAGGTAAATAGC 11036925 >seq25 Length=20042899 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||||||||| ||||||| Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 |||| ||| |||||||| || || || || | ||||||||||||||| ||||| |||| Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 |||| ||||| || || || || ||||| || | ||| || |||||||| |||||| | Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378 Query 33952 AAAATCGTTC 33961 |||||| || Sbjct 6231379 TAAATCGCTC 6231388 >seq21 Length=21368495 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 10317095 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 10317036 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||||| ||| || ||||| || ||||| || |||||||| |||||||||||| Sbjct 10317035 AGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCA 10316976 Query 33726 A 33726 | Sbjct 10316975 A 10316975 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 || |||||||| || ||||||||||||||||||||||| || || | || |||||| Sbjct 10311327 AAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 10311268 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || ||||||| | | || || ||||| | | || ||| ||||||| Sbjct 10311267 TACTTCTCGTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTAGATA 10311219 >seq97 Length=10566181 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | || ||||||| || || ||||||||||||| ||| Sbjct 9101505 GTTACTTTCTATGATGTATATGTTATTCTACAAGCATTTATACTGACTACTGCAGTATTT 9101446 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 ||| | ||||| ||| |||||||||||| ||||||||||| || ||| ||| | |||| Sbjct 9101445 TTTGGTTTGACTGCATATACTCTACAATCTAAGAGAGATTTTAGCAAATTTGGAGCAGG 9101387 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||||| ||||||||| | |||||||||| |||||||| |||||| Sbjct 9118033 GGATCTTTGGGTTTGATTTTAGCATTGACTCTGAACAGACATAAGCATCCCCTTAATCTG 9117974 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 9117973 TACCTGCTTTTTGGATTT 9117956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 188174 CTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACAT 188233 ||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct 9126033 CTCCTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGTGCACAT 9125974 Query 188234 ACGAATGG 188241 ||||||| Sbjct 9125973 CCGAATGG 9125966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629640392945520