Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq347 149 6e-31 seq25 120 3e-22 seq10 116 3e-21 seq74 102 8e-17 seq21 87.8 2e-12 >seq347 Length=3625835 Score = 149 bits (164), Expect = 6e-31 Identities = 569/874 (65%), Gaps = 22/874 (3%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAG 11388 || ||||||| |||| ||| |||| || | || || | |||||||| ||||| | Sbjct 2989061 ACTCCCATCTGCCGATACTCATCTACTC-TCTTCTCAAAGTAGTTAGTCTTCCCTTCCAA 2989003 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| |||| ||| ||||| ||| |||| | ||| |||| || || | | |||| | Sbjct 2989002 TGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCAG 2988943 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 | |||||| ||||| |||||||| || ||| ||||||| | |||||| Sbjct 2988942 TTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCAT 2988883 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 | ||||| | || | | || || | ||||||| |||| | |||| |||| Sbjct 2988882 TCTGATAAGCTTCATAGACAAGGCCTTAGT-AGGAACTCCTATTCTGTCCTAACAGCATT 2988824 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 ||| ||||| ||| | || || ||| |||| | | || ||||||| Sbjct 2988823 AATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATTAG 2988764 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 || | ||| ||||| ||| |||| || ||||| | || |||||||| |||||||| | Sbjct 2988763 GCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTGAG 2988704 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || |||||||||||| ||| || | || ||||| | ||||| |||||| |||||| Sbjct 2988703 GCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAGAA 2988644 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA-TACCTT-GTTGCTAGAT 11806 | | || | ||||||| ||||| || |||| ||| || ||| ||| Sbjct 2988643 GA-TGTTTCTA---CTGCAAAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTCCCCA 2988588 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT- 11865 ||||| | | ||||||||| || |||| ||||| || || |||| || || | Sbjct 2988587 ATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCCCTG 2988528 Query 11866 -AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 | | |||| | |||| || |||| | | || || | | | |||||||| Sbjct 2988527 AAGAGAAATTC--CCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATACA 2988470 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 |||| ||| || ||||||| || |||||||| ||||||| || | || |||| | Sbjct 2988469 TTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTAA 2988410 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || || | ||| || || || | | || |||||||| | || Sbjct 2988409 TCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGTTG 2988351 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA--ATTTAT-CCC 12101 |||| || | || | |||| |||||| || |||| || | || | | | ||| Sbjct 2988350 CAAAGAA-GTCAGAACATGTGATATAAA--ATATTTCTTC-TCAGGCAGGAGGGCTCCCC 2988295 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| || | ||| || || ||| | || ||||| ||| | | || Sbjct 2988294 AGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTT 2988235 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAAT 12195 |||||||||| ||| |||||||| || ||||| Sbjct 2988234 TCTTATACATTTGCCAAATATCATGGTA-TTAAT 2988202 >seq25 Length=20042899 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||| ||||||||||| || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || |||||||| ||| Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 6229174 ACAACACGCTCTCC 6229187 >seq10 Length=25572408 Score = 116 bits (128), Expect = 3e-21 Identities = 411/632 (65%), Gaps = 20/632 (3%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| |||||| | |||| ||| | | || || | || || ||| |||| ||| || Sbjct 5064679 CACTCCCATCCTCTGATGTTCTCCTA-TCCTCTTCTCAAGAAGTTAATCTTCCCTC--AG 5064735 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| ||| |||||| ||| ||| ||||||| ||| ||| ||| || | | ||||| | Sbjct 5064736 TGAAGTATTCTCCATGAAGTAAAATGGATTATCTACTCTGACGACCTTGTTA-AACCTCA 5064794 Query 11449 CTCTGTTAAT-AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 | ||| |||| | ||| | ||||| || ||| ||||||| || || Sbjct 5064795 GTTCCAGAATTAATCAGTTTGCCATGAATTTAATGTACCATTTCATTAAAGTGCATTTTT 5064854 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | | ||||| | || | | | | |||| | ||| |||||| |||| || Sbjct 5064855 TTCTCATAAGCTTCATCATCAAGGTCTCAGTCAGGAGTGCCTGTTCTATCCTAACAATAT 5064914 Query 11568 CAATGATTATCGACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 ||| |||| | ||||| || || || ||| ||||| | ||| | ||||| Sbjct 5064915 TAATAATTACTTATTTTATATTCTCTGCTCTGAAAGTGTATGTAGCAGCTGTGTGAACAT 5064974 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 ||| | ||||| ||||| ||||||||| | ||||| || || | || ||| |||||||| Sbjct 5064975 TAAGAAAGCAAACTCACAGTGTAAACCT-CATCTCTGCTAATAAATTAATTGGAAAATGT 5065033 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||| |||||| |||| || | | | ||||| | ||| ||||||||||| Sbjct 5065034 GAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAAGAACCAGAAAA 5065093 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGA 11805 ||| || | || | || |||| ||| | || ||||||| |||| | | Sbjct 5065094 GAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCAT-----TTGTCCCCA-- 5065146 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||| | |||| || || ||||| ||||| || | | ||| ||| | || Sbjct 5065147 -ATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATTTTAATAACATT 5065205 Query 11866 --AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || |||| | |||| | |||| | | || || || || | | ||||||| Sbjct 5065206 GAAAGGAAATTC--CCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATAC 5065263 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTG 11955 ||||| ||||| || ||||||||||| ||||| Sbjct 5065264 ATTTCAGAATGGATGTTTTCCATAGCAATTTG 5065295 >seq74 Length=12003515 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | ||| |||| || || ||||||||||| || || || || | Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 11048244 CTGTTTCTTACACCAT 11048229 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || |||||||||||||| ||||| |||| |||| | | | || | || Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980 ||| || || |||||||| || || || ||||| || ||||||| ||| | ||| Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCA--TCTTGAGTACGGT 11050900 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||||||||| || ||||| ||||| ||||| | ||| || Sbjct 11050899 TTTTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTT 11050861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || | ||||| | | ||| || ||||| || || | ||||||||||| Sbjct 11042993 CCTTTGCTGACAGGAGAGCCCTCATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCA 11042934 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||| | ||| || || ||||||| || ||||| ||||| || |||| |||| || Sbjct 11042933 CAACTGGCTTCCAGGGCTCCATAATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGG 11042874 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 || ||| || || || | ||| | || | ||||| |||| || | ||| ||||| Sbjct 11042873 GCCTCTGGACTCTCAAAAGGATACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACC 11042814 Query 37534 CCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 || || || || |||| ||| ||||| ||| Sbjct 11042813 CCAATTCCAATTGGTCGATGGCGTTTATTTGAT 11042781 >seq21 Length=21368495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| ||||| ||||| ||||| |||||||| || || Sbjct 10313521 ATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAATATTCTCGATGAG 10313462 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | |||||| ||| Sbjct 10313461 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGTACCTCC 10313416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468392974690960