Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq347 210 3e-49 seq97 149 8e-31 seq10 147 3e-30 seq74 131 2e-25 seq25 129 8e-25 >seq347 Length=3625835 Score = 210 bits (232), Expect = 3e-49 Identities = 409/596 (69%), Gaps = 10/596 (2%) Strand=Plus/Minus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 || ||||| | || | || || |||||| |||||| ||||| |||| | ||| ||| Sbjct 2988774 TTGAACATTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTG 2988715 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 ||||| ||||| || ||||| | || || || || || ||||| || ||||| || Sbjct 2988714 GAAAATGTGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAA 2988655 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGG 36323 ||| |||||| || ||||||||| ||| || | || ||||| ||| | | Sbjct 2988654 CCAAGAAAGAAGATGT-TTCTACTGC---AAAAGCTACAACATGCTCTCTATAGTAGCTT 2988599 Query 36324 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | |||| ||||| | | |||||||| | |||| ||||||||||| || | | Sbjct 2988598 CTTTGTCCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTT 2988539 Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 | || || | |||||| | | |||| ||| ||||||| | || ||| | | | Sbjct 2988538 CAATGGCCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGA 2988479 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 ||||||||||||| ||| |||||||| | ||| |||||||| | ||||| || | | Sbjct 2988478 GACTATACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGG 2988419 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 | || |||||||| |||||| | || | | || || ||||| ||| || || | Sbjct 2988418 CTTCTGTAATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCAT 2988360 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 |||| | |||||| || | || |||||| |||||||||||| | | || || Sbjct 2988359 CACTTGTTGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGG 2988301 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 ||| | | || ||||| || | |||||| || || |||| ||||| || |||| Sbjct 2988300 CTCCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCT 2988241 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAA-ATAACAAA 36738 | || || |||||||| | ||| || ||||| |||| |||| ||||| || ||||| Sbjct 2988240 CAGCTTTCTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq97 Length=10566181 Score = 149 bits (164), Expect = 8e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||| | | |||| |||| ||||| |||||||||||||||| Sbjct 9096595 TTTTTATTAACTGCTTCCAATAAACGCAACAAGTGCAGGAACAAATTGATGATATCCAAG 9096654 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | | |||| | || || | ||| |||||||| || ||| | || || | |||||| Sbjct 9096655 TAAAGACTGATGGCAGCCAATATATACTCTTCAGGTGACAGCCTGTGCATCAATGAGTGA 9096714 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| || || | |||||| || ||||| || |||||||||| Sbjct 9096715 GTGTCATAGATGATGAATCCACAAAAAAGAAGGGCTCCCCCAGCAGCCAAGACCAGCTCC 9096774 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||| ||||| | | ||||| Sbjct 9096775 AGTGTCTCACTATAAAAAAATA 9096796 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| || ||||||||||| |||||||||||||||||||||| | ||| | Sbjct 9101387 CCTGCTCCAAATTTGCTAAAATCTCTCTTAGATTGTAGAGTATATGCAGTCAAACCAAAA 9101446 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || || ||||| | || |||| ||||||||||||||||| Sbjct 9101447 AATACTGCAGTAGTCAGTATAAATGCTTGTAGAATAACATATACATCATAGAAAGTAAC 9101505 Score = 107 bits (118), Expect = 3e-18 Identities = 87/103 (84%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 9125966 CCATTCGGATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 9126025 Query 9907 TGGAGGAGCACGCGTA--GAGGCTC-GGCATGGCCATGGCGGC 9946 |||||||| | | ||| ||| || || | ||||||||||| Sbjct 9126026 TGGAGGAGGAGGGGTAGCGAGAGTCTGGGTTCGCCATGGCGGC 9126068 >seq10 Length=25572408 Score = 147 bits (162), Expect = 3e-30 Identities = 287/420 (68%), Gaps = 13/420 (3%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 ||| | ||||| || | || || || ||||||| ||| || ||||| ||||| |||| Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 |||||||| ||||| || ||||| | || | || || ||| | ||||| | | ||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || ||||||||||| || | ||||| | | ||||||| || |||||||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCATT---- 5065138 Query 36323 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 36382 |||| ||| | ||| || |||||||| ||||| |||||| | | Sbjct 5065139 ----TGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194 Query 36383 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 36442 | ||| |||| || || | | |||| || |||||||| || || ||||| | Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA-AACATCT 36501 |||||||||||||| ||||| |||||||| || || ||||| | | |||| |||| Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC--TAGAGAACA-GA 5065311 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561 || || |||||||| | |||| |||| | | | ||||||||||||||||| || Sbjct 5065312 GGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATGCC 5065371 >seq74 Length=12003515 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || |||| | |||| Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 11048244 CTGTTTCTTACACCATA 11048228 Score = 113 bits (124), Expect = 6e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || || || || | | || ||||||||||||||| || || | || || | Sbjct 11042971 CATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGGGCTCCAT 11042912 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| || |||| |||||| | ||| || || | || ||||| |||| Sbjct 11042911 AATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGAT 11042852 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | || ||||| || ||||||| |||||||| ||||| || || |||| ||| | Sbjct 11042851 ACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGTCGATGGC 11042792 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 11042791 GTTTATTTGA 11042782 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || ||||||||||| || |||||| || | || || || || ||||| | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 11011725 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 11011666 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| |||||| | Sbjct 11011665 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGTCTA 11011606 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 11011605 GTTCCACAGTGGTAACCCCACTGTATAAGCCTTGGATTACTTTCAT 11011560 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | |||| || |||| | Sbjct 11037062 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACG 11037003 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || ||||| || ||||| || | ||| |||||| | | ||| || ||||||| Sbjct 11037002 CTGCTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 11036943 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 11036942 AGGCTCCAGGTAAATAGC 11036925 >seq25 Length=20042899 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||||| Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 113 bits (124), Expect = 6e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 36408 tttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 |||| ||| |||||||| || || ||||| | ||||||||||||||| ||||| |||| Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 |||| ||||| ||||| || || ||||| || | ||| || |||||||| |||||| | Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378 Query 36528 AAAATCGTTC 36537 |||||| || Sbjct 6231379 TAAATCGCTC 6231388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657987614855560