Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq48 107 2e-18 seq368 86.0 6e-12 >seq48 Length=15315231 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| || Sbjct 865965 GTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 865906 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||||||||| ||| ||| || Sbjct 865905 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 865846 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| || |||| ||| | ||||| |||||||| || Sbjct 865845 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTC 865786 Query 139748 TTTACGAATATTTG 139761 || ||||| || || Sbjct 865785 TTCACGAAGATCTG 865772 >seq368 Length=3467158 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||| ||| || || | |||||||| ||||| || ||||| ||||| || ||| Sbjct 925299 TCCTCTAGCTCTTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 925240 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | |||||| ||| | | |||| ||||| ||||||||||||||| || | Sbjct 925239 GCTTGGATTTTGGCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 925180 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 925179 GTCTTGCCCTTCAAGGTCTTCACAAAGATCTGCAT 925145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495924426192800