Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq347 212 9e-50 seq10 147 3e-30 seq25 141 1e-28 seq74 122 1e-22 seq21 116 5e-21 >seq347 Length=3625835 Score = 212 bits (234), Expect = 9e-50 Identities = 589/889 (66%), Gaps = 17/889 (2%) Strand=Plus/Minus Query 49658 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 49717 |||||||||| | | || ||| | || | || || || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 49718 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 49777 |||| ||||| || | || ||||| |||| || || | || ||||| |||| Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 49778 ATT-CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTC 49836 || ||| | ||||| || || || ||||| || || | ||||| | | |||| Sbjct 2988943 GTTTCAGCCTT-AATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885 Query 49837 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 49896 |||| ||||| || | | | ||| |||| ||| | || ||| | || ||| Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAACTCCTA-TTCTGTCCTAACAGCA 2988826 Query 49897 TCTGTTATAATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACA 49954 | | || || | | || | ||| | || ||| || | | | || |||| Sbjct 2988825 TTAATAATTATTTCTTTTAC--TCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 | | || | || || ||||| |||||| ||||| |||| ||||| |||||||| | Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 |||| || ||||| | || || || || || ||||| || ||||| || ||| || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT--GTC 50132 ||||||| ||||||||| ||| || |||| ||||| ||| | || ||| Sbjct 2988647 AGAAGATGT-TTCTACTGC---AAAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTC 2988592 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| | | |||||||| | |||| ||||||||||| ||| |||| ||||| Sbjct 2988591 CCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGC 2988532 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | |||||| | | |||| ||| ||||||| | ||| || | | |||||||| Sbjct 2988531 CCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATA 2988472 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||||| ||| |||||||| | ||| || ||||| | ||||| || | || || || Sbjct 2988471 CATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGT 2988412 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 |||||| |||||| | || | | || | || ||||| ||| || || ||||| | Sbjct 2988411 AATCTGAACTTCTTGGCTAAGTGCTCCATC-AAGTTTTCTGTCAGCATGCCATCACTTGT 2988353 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 |||||| || | || |||||| |||||||| ||| | | || || ||| Sbjct 2988352 TGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCA 2988294 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 | | || ||||| || | ||| || || || |||| ||||| || ||||| || || Sbjct 2988293 GTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTT 2988234 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA-ATAACAAA 50540 |||||||| | ||| || ||||| |||| ||| | ||| || ||||| Sbjct 2988233 CTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 147 bits (162), Expect = 3e-30 Identities = 287/420 (68%), Gaps = 13/420 (3%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||| | ||||| || | || || || ||||| | ||| || ||||| ||||| | || Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||||| || ||||| | || | || || ||| | ||||| | | ||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || |||||||||||||| | ||||| | | ||||||| ||| |||||||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCATT---- 5065138 Query 50125 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 |||| ||| | ||| || |||||||| ||||| |||||| || || Sbjct 5065139 ----TGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 | || |||| || || | | |||| || |||||||| ||||| || || | Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA-AACATCT 50303 |||||||||||||| ||||| |||||||| || || || || | | |||| |||| Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC--TAGAGAACA-GA 5065311 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 || || |||||||| | |||| |||| | | | ||||||||||||||||| || Sbjct 5065312 GGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATGCC 5065371 >seq25 Length=20042899 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||||| Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 |||| ||| |||||||| || || || || | ||||||||||||||| ||||| |||| Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 |||| ||||| || || || || ||||| || | ||| || |||||||| |||||| | Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378 Query 50330 AAAATCGTTC 50339 |||||| || Sbjct 6231379 TAAATCGCTC 6231388 >seq74 Length=12003515 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || ||||||||||| || || ||||| || |||| | |||| Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 11048244 CTGTTTCTTACACCATA 11048228 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | | | |||| ||||||||| || || | ||||| ||| Sbjct 11042969 TAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGGGCTCCATAA 11042910 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| ||||||| |||||| | ||| || ||| | || ||||| ||||| Sbjct 11042909 TAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGATAC 11042850 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || ||||| || ||||||| |||||||| ||||| || || |||| ||| | Sbjct 11042849 CTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGTCGATGGCGT 11042790 Query 79480 TTATTAGA 79487 ||||| || Sbjct 11042789 TTATTTGA 11042782 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || |||||||||||||| || |||||| || | || || || || ||||| | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | ||||| || |||| | ||| Sbjct 11037058 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACGCTGC 11036999 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || ||||| || ||||| || | ||| |||||| | | ||| || ||||||| || Sbjct 11036998 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCAAGGC 11036939 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 11036938 TCCAGGTAAATAGC 11036925 >seq21 Length=21368495 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 10317095 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 10317036 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||||| ||||| || ||||| ||||| || |||||||| || ||||||||| Sbjct 10317035 AGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCA 10316976 Query 50104 AC 50105 || Sbjct 10316975 AC 10316974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718066706094760