Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq347 170 2e-37 seq25 123 2e-23 seq21 91.5 1e-13 seq149 84.2 2e-11 >seq347 Length=3625835 Score = 170 bits (188), Expect = 2e-37 Identities = 599/920 (65%), Gaps = 19/920 (2%) Strand=Plus/Minus Query 13570 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13629 |||| ||||| | |||| ||| ||||| || |||||| ||||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 13630 GTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTA 13689 ||| ||||| || |||| |||||||||| | | | | | ||| || | | |||| | Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 13690 GTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13749 ||| | |||||| || || | || ||||| || ||||||| | ||||| Sbjct 2988943 GTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCA 2988884 Query 13750 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 13809 | | || || || | || | || || | || || | |||| | ||||| | Sbjct 2988883 TTCTGATAAGCTTCATAGACAAGGCCTTAGT-AGGAACTCCTATTCTGTCCTAACAGCAT 2988825 Query 13810 CTTTTATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAA 13866 | ||||| ||| | || |||| | ||||| | | || | || || | Sbjct 2988824 ---TAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 13867 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13926 ||| || | ||| ||||| || ||||||||||| |||||||||| || ||||||| Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 13927 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAA 13986 | | || |||||||||||| ||| || | || ||||| | ||||| || || || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 13987 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT 14046 |||| | | || ||| ||||| |||| | | |||| | | | |||| ||||| Sbjct 2988647 AGAAGA-TGTTTCTACT---GCAAAAGCTACAACATGCTCTCTATA-GTAGCTTCTTTGT 2988593 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| | | ||||| || | | || || | | || || ||||||| | Sbjct 2988592 CCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGG 2988533 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 | | || | | ||||| | || |||| | | | ||| || ||| |||| | |||| Sbjct 2988532 CCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTAT 2988473 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||||||||| ||||||||||| || || ||||| |||| ||||| | ||||| | Sbjct 2988472 ACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTG 2988413 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 || ||||| | || | || ||| ||||| | | || |||||||| | Sbjct 2988412 TAATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTG 2988354 Query 14287 CTGCAAA-AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 |||||| || | || |||| | ||||| |||| || ||| ||| | | Sbjct 2988353 TTGCAAAGAAGTCAGAACATGTGAT--ATAAAATATTTCTTCTCAGGCAGGAGGGCTCCC 2988296 Query 14346 CAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 || | | || | || || |||||||| || || ||| |||| ||||| ||| |||| Sbjct 2988295 CAGTGCTGA-ATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGC 2988237 Query 14405 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGA 14464 ||| ||||||||| ||| || || | ||| | ||| ||| | ||||| | | ||| Sbjct 2988236 TTTCTTATACATTTGCCAAATATCATGGTATTAATTAGAAAAGATGACAAA-GTGGCAGA 2988178 Query 14465 TGTTTCTTTAAGAATTGGTT 14484 ||||| | || | ||||| Sbjct 2988177 GATTTCTCTCAGCAGTGGTT 2988158 >seq25 Length=20042899 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 14014 CTATTAATCGTTCTCC 14029 ||| | || ||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 6227516 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 6227575 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| ||||| |||||||| ||||||||||| Sbjct 6227576 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6227610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||||| | | |||||| || |||||||| | |||||||||||||| |||| Sbjct 6231257 CCTT-TCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTA 6231315 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 |||||||||| || || || || ||||| ||||| | |||||| Sbjct 6231316 TGTTTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTC 6231358 >seq21 Length=21368495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||||| |||| || | ||||||||||| || || | | ||||| | | Sbjct 10335245 TAAAAATCTGCATCCAAGGTGAAAACATTATCTGTGGTT-TCCGCCATAACTGCAAAACG 10335187 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| ||||| |||||||||||| || ||||| ||||||| || || ||||| Sbjct 10335186 CTGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 10335127 Query 13643 CATAAAATCAAATGGATTT 13661 |||||||||||| |||||| Sbjct 10335126 CATAAAATCAAAGGGATTT 10335108 >seq149 Length=8240324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAATTTGA 11366 |||| ||| || |||||||| ||| |||||| | ||| |||| |||| | || Sbjct 3276286 CATCCAAAACTTGAACTTCTTCTGTTTCTGGATAAAAAAATTTATTCACAAATGCTATGG 3276345 Query 11367 GCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACT 11426 || | | ||| || |||| | | |||| | | ||| ||| ||||| | |||||| Sbjct 3276346 GCAATTCAATCACCCTTTTTGAGTTCAAATTTTTCTTTGCCAAAATTAAACATTATAACA 3276405 Query 11427 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 |||||||| || || |||||||||||| | || || |||||| ||||||| Sbjct 3276406 CCAATGTTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATG 3276456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479593022530600