Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq347 143 3e-29 seq25 120 3e-22 seq149 84.2 2e-11 seq21 82.4 7e-11 >seq347 Length=3625835 Score = 143 bits (158), Expect = 3e-29 Identities = 575/892 (64%), Gaps = 20/892 (2%) Strand=Plus/Minus Query 13358 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCA 13417 |||| ||||| | |||| ||| ||||| || ||||| ||||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 13418 GTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTA 13477 ||| ||||| || |||| || ||||||| | | | | | ||| || | | |||| | Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 13478 GTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13537 ||| | |||||| || || | || ||||| || ||||||| | ||||| Sbjct 2988943 GTTTCAGCCTTAATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTCA 2988884 Query 13538 TACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCT 13597 | | || || || | || | ||||| | || || | |||| | ||||| | Sbjct 2988883 TTCTGATAAGCTTCATAGACAAGGCCTTAGT-AGGAACTCCTATTCTGTCCTAACAGCAT 2988825 Query 13598 CGTTTATAATAATCT-TAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAA 13654 | ||||| || | | || | || | ||||| | | || | || || | Sbjct 2988824 ---TAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 ||| || | ||| ||||| || ||||||||||| |||||||||| || ||||||| Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 | | || |||||||||||| ||| || | || ||||| | || || || || || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 |||| | | || ||| ||||| |||| | | |||| | | | |||| ||||| Sbjct 2988647 AGAAGA-TGTTTCTACT---GCAAAAGCTACAACATGCTCTCTATA-GTAGCTTCTTTGT 2988593 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 ||||| | | ||||| || | | || || | | || || |||| || | Sbjct 2988592 CCCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGG 2988533 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | |||| | | |||| | || |||| | | | ||| || ||| |||| | |||| Sbjct 2988532 CCCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTAT 2988473 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||||||||| ||||||||| | || || ||||| |||| || || | ||||||| Sbjct 2988472 ACATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTG 2988413 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 || || || | || | || ||||||||| | | || |||||||| | Sbjct 2988412 TAATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTG 2988354 Query 14075 CTGCAAA-AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14133 |||||| || | || |||| | ||||| |||| || ||| ||| | | Sbjct 2988353 TTGCAAAGAAGTCAGAACATGTGAT--ATAAAATATTTCTTCTCAGGCAGGAGGGCTCCC 2988296 Query 14134 CAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || | ||| || || || |||||||| || || ||| |||| ||||| ||| ||| Sbjct 2988295 CAGT--GCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAG 2988238 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 |||| ||||||||| ||| || || | ||| | ||| ||| | ||||| Sbjct 2988237 CTTTCTTATACATTTGCCAAATATCATGGTATTAATTAGAAAAGATGACAAA 2988186 >seq25 Length=20042899 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| || ||||| ||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | || ||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||||| | | |||||| || |||||||| | |||||||||||||| |||| Sbjct 6231257 CCTT-TCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTA 6231315 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||| || || || || || ||||| || || | |||||||| Sbjct 6231316 TGTTTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTG 6231360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 6227516 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 6227575 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 |||||||| ||||| |||||||| || |||||||| Sbjct 6227576 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6227610 >seq149 Length=8240324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 11122 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTT-TTCAAAAATAATTTGT 11180 |||| ||| || |||||||| ||| |||||| | ||| |||| |||| | || Sbjct 3276286 CATCCAAAACTTGAACTTCTTCTGTTTCTGGATAAAAAAATTTATTCACAAATGCTATGG 3276345 Query 11181 GCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACT 11240 || | || ||| || |||| | | |||| | | ||| | | ||||| | |||||| Sbjct 3276346 GCAATTCAATCACCCTTTTTGAGTTCAAATTTTTCTTTGCCAAAATTAAACATTATAACA 3276405 Query 11241 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 |||||||| || || |||||||||||| | || || |||||| ||||||| Sbjct 3276406 CCAATGTTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATG 3276456 >seq21 Length=21368495 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13370 |||||||| |||| || | ||||||||||| || || | | ||||| | | Sbjct 10335245 TAAAAATCTGCATCCAAGGTGAAAACATTATCTGTGGTT-TCCGCCATAACTGCAAAACG 10335187 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| ||||| ||||||||| || || ||||| ||||||| || || ||||| Sbjct 10335186 CTGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 10335127 Query 13431 CATAAAATCGAATGGATTT 13449 ||||||||| || |||||| Sbjct 10335126 CATAAAATCAAAGGGATTT 10335108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478454143058760