Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq347 219 6e-52 seq10 143 4e-29 seq25 138 2e-27 seq74 129 8e-25 >seq347 Length=3625835 Score = 219 bits (242), Expect = 6e-52 Identities = 588/887 (66%), Gaps = 13/887 (1%) Strand=Plus/Minus Query 41763 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCA 41822 |||||||||| | | || ||| | || | || || || | |||||||| ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 41823 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 41882 |||| ||||| || | || ||||| |||| || || | || ||||| |||| Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 41883 ATT-CAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTC 41941 || ||| | ||||| ||||| | |||||| || || | ||||| | | |||| Sbjct 2988943 GTTTCAGCCTT-AATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885 Query 41942 ATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCG 42001 |||| ||||| || | | | ||| |||| ||| | || ||| | || || Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAACTCCTA-TTCTGTCCTAACAGCA 2988826 Query 42002 TCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061 | | || || | ||||| | | || ||| | | | | || ||||| Sbjct 2988825 TTAATAATTATTTCTTTTACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATT 2988766 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 | || | || || ||||| |||||||||||| |||| | ||| |||||||| ||| Sbjct 2988765 AGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTG 2988706 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || ||||| | || || || || || ||||| || ||||| || ||| |||| Sbjct 2988705 AGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAG 2988646 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACTGTCAT 42239 ||||| ||||||||| ||| || | || ||||| ||| | | | |||| Sbjct 2988645 AAGATGT-TTCTACTGC---AAAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTCCC 2988590 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | | |||||||| | |||| ||||||||||| ||| |||| ||||| Sbjct 2988589 CAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCCC 2988530 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | |||||| | | |||| ||| ||||||| | || || | | |||||||||| Sbjct 2988529 TGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATACA 2988470 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| ||| |||||||| | ||| || ||||| | ||||| || | ||| || |||| Sbjct 2988469 TTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTAA 2988410 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 ||| |||||| | || | | || | || ||||| ||| || || ||||| | || Sbjct 2988409 TCTGAACTTCTTGGCTAAGTGCTCCATC-AAGTTTTCTGTCAGCATGCCATCACTTGTTG 2988351 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 |||| || | || |||||| |||||||||||| | || || | ||| | Sbjct 2988350 CAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCAGT 2988292 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | || ||||| || | ||| || || || | || ||||| || || || || || | Sbjct 2988291 GCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTTCT 2988232 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAA-ATAACAAA 42645 ||||||| | ||| |||||||| |||| |||| | ||| || ||||| Sbjct 2988231 TATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 143 bits (158), Expect = 4e-29 Identities = 286/420 (68%), Gaps = 13/420 (3%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||| | ||||| || | || || || ||||| | ||| |||||||| ||||| |||| Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||| ||||| || ||||| | || | || || ||| | ||||| | | ||| Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || |||||||||||||| | ||||| | | ||||||| || |||||||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCAT----- 5065137 Query 42230 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 |||| ||| | ||| || |||||||| ||||| |||||| || || Sbjct 5065138 ---TTGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 | || |||| || || | | |||| || |||||||| || || || || | Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA-AACATCT 42408 |||||||||||||| ||||| |||||||| || || || || | | |||| |||| Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC--TAGAGAACA-GA 5065311 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||| || |||| ||| | |||| |||| | | | |||||||| |||||||| || Sbjct 5065312 GGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATGCC 5065371 >seq25 Length=20042899 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||||||||| ||||||| Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 42207 CAATAAGTCTCTCTCC 42222 | | || | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 |||| ||| |||||||| || || || || | ||||||||||||||| ||||| |||| Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 |||| ||||| || || || || ||||| || | || || |||| ||| |||||| | Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378 Query 42435 AAAATCGTTC 42444 |||||| || Sbjct 6231379 TAAATCGCTC 6231388 >seq74 Length=12003515 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||| ||||| || |||| | || | Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 11048244 CTGTTTCTTACACCAT 11048229 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||||||||||||| || || | |||||||||||||||||||| ||||||| |||||| Sbjct 11042942 GCTAGTTCACAACTGGCTTCCAGGGCTCCATAATAAATGGTTTCAAAAATCTGCTTATTC 11042883 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 | ||| || || || || ||||| ||||| | | || ||||| || ||||||| Sbjct 11042882 AATAATTGGGCCTCTGGACTCTCAAAAGGATACCTCATCAGGATAAAAGCATCTGCTAGA 11042823 Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 |||||||| ||||| || || |||| || | ||||| || Sbjct 11042822 CCTTGAACCCCAATTCCAATTGGTCGATGGCGTTTATTTGA 11042782 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || ||||||||||| || |||||| ||| |||| || || ||||| || | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | ||||| || |||| | ||| Sbjct 11037058 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACGCTGC 11036999 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || ||||| || ||||| || | ||| |||||| | | ||| || ||||||| || Sbjct 11036998 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCAAGGC 11036939 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 11036938 TCCAGGTAAATAGC 11036925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670950366596840