Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq662 84.2 2e-11 >seq662 Length=1284721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 43896 CTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA 43955 |||| ||||| || | ||||| || |||||| |||||| || || | || || | Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 43956 ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTA 44015 || |||| |||| ||||| || ||||| ||||||| |||||||| |||| | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 44016 CACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACAT 44075 ||||| |||||| || ||| ||||| | ||| || || ||||| || | Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTT 540057 Query 44076 CGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | | |||| || |||| ||| | ||||||||||| || ||||| Sbjct 540058 CAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCAT 540103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354680274415332