Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq30 91.5 1e-13 >seq30 Length=19208098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| || || ||||| | ||||| Sbjct 15109579 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCCATA 15109520 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| ||| || ||||| || Sbjct 15109519 T-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCA 15109461 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTAT 25652 | || | ||| ||||| || || || Sbjct 15109460 AAGGGCATGGCAGGGAGGCAGTGCCAT 15109434 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25783 TACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCC 25842 || ||||| || |||| ||||||||| || || || || || |||| ||||| |||| Sbjct 15106148 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTACTTCT 15106089 Query 25843 CTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTT 25902 | | || ||| | ||||||||||||| ||| |||||||| ||||||||||| Sbjct 15106088 CGGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAGATCTTC 15106029 Query 25903 ACCCCCTT 25910 || ||||| Sbjct 15106028 ACTCCCTT 15106021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340044290583657