Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq684 89.7 3e-13 seq330 86.0 3e-12 seq19 84.2 1e-11 seq371 82.4 4e-11 seq306 82.4 4e-11 seq255 82.4 4e-11 seq130 82.4 4e-11 seq31 82.4 4e-11 >seq684 Length=1121939 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 120768 AAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 120827 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 120828 CAACTGAGCTAACCGGCC 120845 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 171055 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 170996 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 170995 CTGAGCTAACCGGCC 170981 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 245443 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 245502 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 245503 CTGAGCTAACCGGCC 245517 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| |||||| | |||||||||| ||||||| ||||||||||||| | | Sbjct 622603 AAAACACAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCATG 622544 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 622543 CTCTAACCAACTGAGCTAACCGGCC 622519 Score = 82.4 bits (90), Expect = 4e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 120328 AATGAAAAAAAAAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 120387 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||| |||||||||| |||| Sbjct 120388 CACGCTCTAACCGACTGAGCTAACCGGCC 120416 >seq330 Length=3944073 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 2079523 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 2079582 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2079583 ACTGAGCTAACCGGCC 2079598 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2050251 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2050192 Query 11528 CC 11529 || Sbjct 2050191 CC 2050190 >seq19 Length=22429565 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2797720 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2797661 Query 11528 CCGTC 11532 || || Sbjct 2797660 CCATC 2797656 >seq371 Length=3337537 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1447193 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1447252 Query 11528 CC 11529 || Sbjct 1447253 CC 1447254 >seq306 Length=4280784 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 1123169 TGGCCCATACGGGAATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 1123228 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 1123229 TGAGCTAACCGGCC 1123242 >seq255 Length=5298548 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4616199 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4616140 Query 11528 CC 11529 || Sbjct 4616139 CC 4616138 >seq130 Length=8672310 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| ||||||||||| ||||||| | ||||||||||| | ||||| |||||| Sbjct 2489501 TGGCCCATATGGGGATCGAACCTACGACCTTGGTGTTATTAGCACCATGCTCTAACCAAC 2489442 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 2489441 TGAGCTAACTGGCC 2489428 >seq31 Length=18619288 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | |||| ||||| |||||| ||||||||||||| ||||||| |||||| Sbjct 4709769 TGGCCCATACAGGGATTGAACCCATGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 4709710 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 4709709 TGAGCTAACCGGCC 4709696 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261419465527684