Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq13 104 3e-17 >seq13 Length=23775791 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || || |||| || |||||| |||| |||||||||| ||| | Sbjct 21044046 AGGGTTACCTGGGTTGCCAAGCTTTGTCAGAGATGATCAAGTTCTACCTGGAGGTAGTGA 21044105 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || || || ||| ||||| |||||||| ||||| || | Sbjct 21044106 TGCCACAGGCTGAGAACCAAAGTCCAAACATCAAGGAGCATGTGAACTCCCTGGGGGAAA 21044165 Query 10260 ATCTAAAGACCCTAAGG 10276 | || | ||||| ||| Sbjct 21044166 AGCTGACAACCCTCAGG 21044182 Score = 102 bits (112), Expect = 9e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 10351 CTTCAGCA-AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTA 10409 |||| ||| |||| || || ||||| |||||||| |||||||||||||||||||| || | Sbjct 21046264 CTTCTGCACAGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAATTTGACATCTTCA 21046323 Query 10410 TTAACTATATAGAAGCATACATGACCATGAA 10440 ||||||| |||||| | |||||||| ||||| Sbjct 21046324 TTAACTACATAGAAACCTACATGACAATGAA 21046354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547225188019840