Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq373 149 9e-31 seq37 96.9 5e-15 >seq373 Length=3354714 Score = 149 bits (164), Expect = 9e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9631 GTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCAC 9690 || ||||| || | |||| ||| |||||||||||| || |||| || |||||||| Sbjct 2693100 GTTGTCTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCGCAT 2693041 Query 9691 ACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCA 9750 ||||| || ||||||| ||||| || || || |||||||| |||||||||||||| ||| Sbjct 2693040 ACTCTATTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGACCA 2692981 Query 9751 AAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATG 9810 || ||||||| || || || | || | || || || | || || |||||||| Sbjct 2692980 AAGACCTCTTGGCCCACGGCAAAGCGATGGTGCTCAGGGACATGAGGGGGGTAGATCATC 2692921 Query 9811 TGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 | |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 2692920 TCTGCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 2692869 Score = 138 bits (152), Expect = 2e-27 Identities = 201/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| || || || ||| | |||| ||||||||||| | || | |||| ||| | Sbjct 2695058 GGACAGCCCTTCACATTGTTGCAGATGAGAGACTGGATTGAGGCTGTGTTGATGATTTTA 2694999 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || || || ||||| ||||| || |||||||| || || || || || Sbjct 2694998 AAACCTACTTCCCCACCGAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACATATAGGATTA 2694939 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||||||| ||||| | ||| || || || || | || | ||| ||||||| |||||| Sbjct 2694938 CCCATGAGTCCTTTCAAGGAGAATGGTGCTCCTAATTCTACCATGGTCTCACCAAAGATG 2694879 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || | ||||| |||||||| |||| | | | |||| ||||| ||| || ||||| Sbjct 2694878 GCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATGTCA 2694819 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || || ||| | || ||||| |||||||| |||||||| Sbjct 2694818 CCATACAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCTCCTGT 2694775 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| |||| |||||| ||||| | || |||||| ||| ||| | || Sbjct 2691803 TCTTACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 2691744 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 2691743 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2691684 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 2691683 AGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 2691624 Query 10208 ttttttACCT 10217 |||||| ||| Sbjct 2691623 TTTTTTCCCT 2691614 Score = 93.3 bits (102), Expect = 6e-14 Identities = 183/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| |||| | ||||| ||||| || | | |||| || || | Sbjct 2693978 CTTACCCTGCCAGCAGTTTGCCTGGTGAATGATTCCACAAAGTTAGTAAGTCCATGTTCC 2693919 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| |||| |||||||| Sbjct 2693918 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTACTCCTGATTATCAATTA 2693861 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| ||||| |||| |||| ||||||||| || | |||||||||| | | || | Sbjct 2693860 GAAAGGCATCAGGCAGAAGAGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATGC 2693801 Query 9500 GATTTTGGTACTGGAA--CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 |||||||||||||||| | || || |||||||| || | |||| || || || Sbjct 2693800 GATTTTGGTACTGGAATTCTTGGT--TGAAAAGCAGTTCAGGGTCAAACTTCAGTTGGAA 2693743 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 || ||||| || | ||||| ||||| Sbjct 2693742 GTAATAGCCACTCAAGTGCTGCACATA 2693716 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | ||||| || || || ||||| || ||||| || || | || Sbjct 2691017 ACCTTTCACACCCATCGGAGTGGGGCAGTCATGAGGCACAGGAGGAAGGGCTCTGGTATA 2690958 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| ||||| || |||||||||||| ||| | |||| | || || | || Sbjct 2690957 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 2690898 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| ||||| ||||| Sbjct 2690897 TGGACTGTCAATCAAATGTGATCTTGCTGAA 2690867 >seq37 Length=17483923 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || ||||| || |||||||| |||||||| |||| || |||||| ||| ||| |||| Sbjct 2520135 TCGCCGCCAAATGTGCTGGGCTTCCAGTACTCCGGAGAACAGATGGGATTCCCCAGGAGG 2520194 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || ||||||||||| || | ||| | | | || ||||| || ||||||| ||| ||| Sbjct 2520195 CCCTTGAGGGAAAAAGGCGACCCAATTTGTATCATACTCTCCCCAAAGATGGAGTTTGGA 2520254 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGG 8941 || ||| || | | | || | || ||||||| || ||||| || || || || Sbjct 2520255 TGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCATGGCATCGATATCACCATATAGT 2520314 Query 8942 GCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | || || || || ||||| |||||| Sbjct 2520315 TCTTCCAACTCAGCTGCCATCTCCTTCTCTCCT 2520347 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 2533905 CTCACCCCATGGCCCACGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 2533962 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| || || ||||| | |||||||||||||| | ||||| ||| ||||||| Sbjct 2533963 AGAACTGGTGGGTAAAGTGTTGTGCGAAAAAGGCAAACATGAGGTTGGCGCCTTGGGGAT 2534022 Query 10147 CGGGAGTGAAGGTCCTCCGAAGAAG 10171 | || |||| |||||| ||| || Sbjct 2534023 CAGGTATGAACTTCCTCCTAAGCAG 2534047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708325447690960