Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48 127 2e-24 seq662 96.9 3e-15 seq139 96.9 3e-15 >seq48 Length=15315231 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||||| || | |||| ||||| ||| || || || || | ||| | Sbjct 866231 TTTGCATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGT 866172 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| ||| ||||||||||| ||| ||||||| || || ||||| | Sbjct 866171 AGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGT 866112 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| |||||||| ||||| | || ||||||||||| | | |||||| | Sbjct 866111 CAGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGG 866052 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 866051 GCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCAT 865997 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 || ||||| ||||| |||| |||||||||| ||| || || || || | ||| || || Sbjct 867015 ACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 866956 Query 94838 CTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 || || ||| ||||||||||| || ||||||| || || ||||| || ||| Sbjct 866955 GACAGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGA 866896 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| || || | || ||||||||||| | | |||||| | || Sbjct 866895 GGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCT 866836 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| || || || || || || ||||| ||||||||||| Sbjct 866835 ACTTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| ||||||| || | |||| ||||| ||| || || || || | | Sbjct 866007 AAAATCTGCATTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATG 865948 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| ||| ||||||||||| || ||||||| || || ||| Sbjct 865947 TTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGC 865888 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || ||||| || ||||||||||| | || ||||||||||| | | |||||| Sbjct 865887 TGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCA 865828 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 | | || || |||| ||||| || || || || | || ||||| |||||||| Sbjct 865827 CTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || || ||||| || ||||| || ||||| ||||| | || ||||||||||| Sbjct 865671 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 865612 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | |||||| | | || || |||| || ||||| || ||||| || || ||| Sbjct 865611 TTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTC 865552 Query 94994 ACAAAGATCTGCAT 95007 |||||||||||||| Sbjct 865551 ACAAAGATCTGCAT 865538 >seq662 Length=1284721 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 94782 CTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCA 94841 |||| ||||| | || |||||||||| || || || || || | || || || || Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 94842 TAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAA 94901 || ||| ||||||||||| || ||||||| || || ||||| || ||||| | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 | ||||| || || | || ||||||||||| | | |||||| | | || || | Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTT 540057 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | ||||| || | || || || ||||||||||||||||| Sbjct 540058 CAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCAT 540103 >seq139 Length=8626845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || || || || ||||||||||||||||| Sbjct 1931189 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTT 1931130 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| || ||| | | || || || | ||||| Sbjct 1931129 ATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGAT 1931070 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||||||||| Sbjct 1931069 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || || || || ||||||||||||||||| Sbjct 1931417 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTT 1931358 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| || ||| | | || || || | ||||| Sbjct 1931357 ATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGAT 1931298 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||||||||| Sbjct 1931297 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448165067667240