Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq255 158 2e-34 seq684 145 1e-30 seq474 98.7 2e-16 >seq255 Length=5298548 Score = 158 bits (174), Expect = 2e-34 Identities = 203/280 (73%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | ||| ||||| || |||||||| || || || || || ||| Sbjct 4093633 GCTAAGCGCCACCGTAAAGTTCTGCGAGACAATATCCAAGGTATTACAAAACCCGCCATC 4093574 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || || ||||| || | ||||| | | |||||||||| Sbjct 4093573 CGGCGTTTGGCTCGTAGAGGCGGTGTCAAACGCATTTCTGGTCTCATTTATGAAGAGACG 4093514 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| ||||||| ||| ||| || | || ||| || ||| |||||| Sbjct 4093513 CGTGGGGTTCTGAAAGTCTTCCTAGAGAACGTCATTCGCGACGCTGTCACCTACACCGAG 4093454 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| ||||||| || | || || || || Sbjct 4093453 CACGCCAAGCGCAAGACAGTCACAGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGG 4093394 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAA 16712 || | | ||||| |||||| ||||| || | ||||| Sbjct 4093393 CGAACTCTATATGGCTTTGGAGGTTAAGGTTGTTCTCAAA 4093354 Score = 152 bits (168), Expect = 8e-33 Identities = 198/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | || || || || || || |||||||||||||| || || Sbjct 4396662 CGCTAAGCGTCATCGGAAGGTGCTGCGTGACAATATTCAGGGAATCACCAAGCCTGCAAT 4396603 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || |||||||| | ||||| | | || ||||||| Sbjct 4396602 CCGGCGTCTGGCTCGGCGTGGCGGGGTCAAGCGCATTTCTGGTCTTATTTACGAAGAGAC 4396543 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| || |||| || ||| | ||| || || Sbjct 4396542 GCGCGGTGTGCTCAAGGTTTTTCTGGAGAATGTAATCCGGGACGCTGTTACCTACACAGA 4396483 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||| ||||||||||| ||| ||||||| | || || ||| |||| ||||| || Sbjct 4396482 GCATGCTAAGCGTAAGACTGTTACCGCCATGGACGTGGTGTACGCACTGAAGCGTCAGGG 4396423 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | | || || || || | ||| || || Sbjct 4396422 ACGCACGCTCTACGGCTTCGGCGGCTAAGCTGCT 4396389 Score = 140 bits (154), Expect = 5e-29 Identities = 191/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | ||| || ||||| |||||||| || |||||||| || || Sbjct 4165075 GCCAAGCGCCACCGCAAAGTTCTCCGCGATAATATCCAAGGGATTACCAAGCCGGCCATT 4165134 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || || || |||||||| ||||||| | | || || |||| Sbjct 4165135 CGTCGTCTAGCTCGGCGAGGAGGTGTCAAGCGCATCTCTGGTCTCATTTACGAGGAGACC 4165194 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| || |||| || || || ||| |||||| Sbjct 4165195 CGCGGAGTGCTGAAGGTCTTCCTGGAGAATGTGATCCGAGACGCCGTCACCTACACCGAG 4165254 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| | || || || |||| || || || Sbjct 4165255 CACGCCAAGCGCAAGACAGTCACTGCTATGGACGTGGTGTACGCGCTGAAGCGGCAGGGG 4165314 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 4165315 CGCACCCTTTACGGCTTCGGGGGTTAA 4165341 Score = 138 bits (152), Expect = 2e-28 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 4361360 CGTGATAACATCCAGGGTATTACCAAACCAGCCATCCGCCGTCTGGCTCGGCGTGGTGGC 4361419 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| ||| | | ||||| |||| ||| | || | || |||| || Sbjct 4361420 GTCAAGCGCATCTCAGGACTCATTTATGAGGAGACTCGCGGAGTGCTCAAAGTCTTTCTA 4361479 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || |||| |||||| | || ||||||||||| || || || || |||||| Sbjct 4361480 GAAAATGTGATCCGTGATGCCGTGACTTACACCGAGCACGCCAAGCGCAAAACAGTCACC 4361539 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | ||||| || | ||||| || || || | | || || || || | Sbjct 4361540 GCTATGGATGTGGTCTACGCGCTCAAACGCCAGGGGCGCACCCTCTACGGCTTCGGCGGC 4361599 Query 16697 TAATCT 16702 |||||| Sbjct 4361600 TAATCT 4361605 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | | || |||||||||||||| || || ||||| ||||| Sbjct 4283998 GCCAAGCGCCATCGGAAAGTGTTACGGGATAACATCCAAGGCATTACGAAGCCTGCTATT 4283939 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| |||||||| || ||||| | || || | | ||||| || | Sbjct 4283938 CGGCGTTTGGCTCGGCGTGGTGGTGTGAAGCGAATTTCAGGCCTTATTTATGAGGAAACC 4283879 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| |||| | ||| ||| || | ||||| | ||| || ||| Sbjct 4283878 CGAGGCGTTCTTAAGGTCTTTTTGGAGAACGTGATTCGCGATGCCGTTACCTACACAGAG 4283819 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || || || ||||| | |||||| | || |||||| | || ||||| || Sbjct 4283818 CACGCTAAGCGCAAAACAGTCACTGCTATGGATGTTGTTTATGCACTTAAGCGTCAGGGG 4283759 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||| ||||| Sbjct 4283758 CGTACTCTCTATGGCTTTGG 4283739 >seq684 Length=1121939 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || ||||| || || ||||| || ||||| || || |||| Sbjct 791373 CGCAAAGCGCCACCGCAAGGTC-CTTCGGGACAATATCCAGGGTATCACTAAACCTGCTA 791315 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| |||||||| || || || || ||||||| | |||| || |||| Sbjct 791314 TCCGGCGTTTGGCACGTCGTGGCGGTGTTAAACGCATCTCTGGCCTCATCTACGAGGAGA 791255 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | || ||||||| ||| || |||| || ||| || ||| |||| Sbjct 791254 CTCGCGGGGTGCTTAAAGTCTTCCTGGAGAATGTAATCCGAGACGCTGTCACCTACACCG 791195 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||||||||| |||||| ||||||| | ||||| || | || || || | Sbjct 791194 AGCACGCAAAACGTAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 791135 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || || ||||| Sbjct 791134 GTCGCACCCTCTACGGCTTTGG 791113 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | || || |||||||||||||| |||||||| || || || Sbjct 734047 GCTAAGCGCCACCGTAAGGTACTCCGCGATAACATCCAAGGCATCACCAAACCTGCAATT 734106 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || |||||||| | ||||| | |||| || |||| | Sbjct 734107 CGGCGTCTGGCTCGGCGTGGCGGTGTCAAGCGCATTTCTGGCCTTATCTACGAGGAGACT 734166 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | || | || || ||| || |||| ||| ||| || ||| || ||| Sbjct 734167 CGCGGCGTACTCAAAGTGTTTCTGGAGAATGTGATCCGTGACGCTGTCACCTACACTGAG 734226 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| ||||| ||||||| | ||||| || | || || || || Sbjct 734227 CACGCCAAGCGTAAGACAGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGGCAGGGT 734286 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| || || || Sbjct 734287 CGCACCCTTTACGGCTTCGG 734306 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| || || || || ||||| || ||||| || |||||||| || | Sbjct 81640 CGCTAAGCGTCACCGCAAGGTC-CTCCGTGATAATATTCAAGGTATTACCAAGCCTGCCA 81698 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || || || ||||||||| ||||||| | |||| || |||| Sbjct 81699 TCCGGCGTCTAGCGCGGCGCGGCGGCGTCAAGCGTATCTCTGGCCTTATCTACGAGGAGA 81758 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | || ||||||| | | || |||| || || || ||| |||| Sbjct 81759 CCCGCGGGGTGCTCAAAGTCTTCCTAGAAAATGTGATCCGCGACGCCGTCACCTACACCG 81818 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | ||||| | ||||| || | || || |||| Sbjct 81819 AGCACGCCAAGCGCAAGACAGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAAG 81878 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || || ||||| Sbjct 81879 GGCGGACCCTCTACGGCTTTGG 81900 >seq474 Length=2271054 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/244 (70%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||| || ||||| |||||||| ||||| | |||||||| Sbjct 790936 CGGGACAACATCCAGGGCTTCAGGAAACCAGCCATCCGTCGCCTGGCGTGCCGTGGTGGC 790877 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| ||||| | | | |||| |||| || | |||| | ||| ||| || Sbjct 790876 GTTAAACGTATCTCTAGCCTCATTTATGTGGAGA--CGCGGTGTTCTCAAGGGCTTTCTG 790819 Query 16577 AAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| || || | ||||| || || || ||||||||||| || || ||||| ||||| Sbjct 790818 GAGAATGTGATACGGGATGCGATTACA-TACACCGAGCACGCCAAGCGCAAGACAGTCAC 790760 Query 16636 CTCCAT-------GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTT 16688 |||| |||| | ||||| || |||| || || ||||| | | | | ||| | Sbjct 790759 GGCCATGGGTGTGGGATGTGGTCTACGCTCTGAAGCGCCAGGGCCGAACGCTCTTTGGCT 790700 Query 16689 TTGG 16692 |||| Sbjct 790699 TTGG 790696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054619863737