Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq21 104 2e-17 seq25 89.7 5e-13 >seq21 Length=21368495 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||||||||||||| ||| | ||||| | | | Sbjct 10335247 TTTAAAAATCTGCATCCAAGGTGAAAACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 10335188 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| |||||| || |||||||| || |||||||| || || || Sbjct 10335187 GCTGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTT 10335128 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 10335127 CCATAAAATCAAAGGGATTTTC 10335106 >seq25 Length=20042899 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| |||||||| | || ||||||||||||| || || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| |||||||| ||||| | || |||||||| || || || || || ||||| || Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 21620 AC 21621 || Sbjct 6229174 AC 6229175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| | | ||| ||| ||| | ||||||| | |||| Sbjct 6227468 TTCATTTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6227527 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| Sbjct 6227528 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 6227587 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 6227588 TTCTCCATAAAGTCAAATGGATTCTC 6227613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531751143061160