Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq347 221 2e-52
seq10 147 3e-30
seq25 132 6e-26
seq74 131 2e-25
seq21 123 3e-23
>seq347
Length=3625835
Score = 221 bits (244), Expect = 2e-52
Identities = 591/889 (66%), Gaps = 17/889 (2%)
Strand=Plus/Minus
Query 33002 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33061
|||||||||| | | || ||| | || | || || || | ||||| || |||||||
Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004
Query 33062 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 33121
|||| ||||| || | || ||||| |||| || || | || ||||| ||||
Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944
Query 33122 ATT-CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33180
|| ||| | ||||| || || |||||||| || || | ||||| | | ||||
Sbjct 2988943 GTTTCAGCCTT-AATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885
Query 33181 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 33240
|||| ||||| || | | | ||| |||| ||| | || ||| | || |||
Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAACTCCTA-TTCTGTCCTAACAGCA 2988826
Query 33241 TCTGTTATAATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACA 33298
| | || || | | || | ||| | || ||| || | | | || ||||
Sbjct 2988825 TTAATAATTATTTCTTTTAC--TCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768
Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358
| | || | || || ||||| |||||| ||||| |||| ||||| |||||||| |
Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708
Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418
|||| || ||||| | || || || || || ||||| || || || || ||| ||
Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648
Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCTGTC 33476
||||||| |||||||||| || || | || ||||| ||| | | | ||||
Sbjct 2988647 AGAAGATGT-TTCTACTGCA---AAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTC 2988592
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
||||| | | |||||||| | |||| ||||||||||| ||| |||| |||||
Sbjct 2988591 CCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGC 2988532
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
| |||||| | | |||| ||| ||||||| | ||| || | | ||||||||
Sbjct 2988531 CCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATA 2988472
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
|||||| ||| |||||||| | ||| || ||||| | ||||| || | || || ||
Sbjct 2988471 CATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGT 2988412
Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716
|||||| |||||| | || | | ||| ||| ||||| ||| || || ||||| |
Sbjct 2988411 AATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGT 2988353
Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776
|||||| || | || |||||| |||||||||||| | || || || |||
Sbjct 2988352 TGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCA 2988294
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
| | || ||||| || | ||| || || || |||| ||||| || ||||| || ||
Sbjct 2988293 GTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTT 2988234
Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA-ATAACAAA 33884
|||||||| | ||| || |||| |||| ||| | ||| || |||||
Sbjct 2988233 CTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186
>seq10
Length=25572408
Score = 147 bits (162), Expect = 3e-30
Identities = 287/420 (68%), Gaps = 13/420 (3%)
Strand=Plus/Plus
Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348
||| | ||||| || | || || || ||||| | ||| || ||||| ||||| | ||
Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022
Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408
|||||||| ||||| || ||||| | || | || || ||| | ||||| | | ||
Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082
Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468
|| |||||||||||||| | ||||| | | ||||||| || ||||||||
Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCATT---- 5065138
Query 33469 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528
|||| ||| | ||| || |||||||| ||||| |||||| || ||
Sbjct 5065139 ----TGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194
Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588
| || |||| || || | | |||| || |||||||| ||||| || || |
Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254
Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA-AACATCT 33647
|||||||||||||| ||||| |||||||| || || || || | | |||| ||||
Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC--TAGAGAACA-GA 5065311
Query 33648 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707
|| || |||||||| | |||| |||| | | | ||||||||||||||||||| ||
Sbjct 5065312 GGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATGCC 5065371
>seq25
Length=20042899
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| |||||||| ||||| || ||||||| || || || |
Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||||||||| |||||||
Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171
Query 33446 CAATAAGTCTCTCTCC 33461
| | || | ||||||
Sbjct 6229172 CTACAACACGCTCTCC 6229187
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613
|||| ||| |||||||| || || || || | ||||||||||||||| ||||| ||||
Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318
Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673
|||| ||||| || || || || ||||| || | ||| || |||||||| |||||| |
Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378
Query 33674 AAAATCGTTCCGCC 33687
|||||| ||| ||
Sbjct 6231379 TAAATCGCTCCACC 6231392
>seq74
Length=12003515
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||| |||| || ||||||||||| ||||| ||||| || |||| | ||||
Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 11048244 CTGTTTCTTACACCATA 11048228
Score = 109 bits (120), Expect = 7e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || || || || | | || ||||||||||||||| || || | || || |
Sbjct 11042971 CATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGGGCTCCAT 11042912
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| || |||| |||||| | ||| || || | || ||||| ||||
Sbjct 11042911 AATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGAT 11042852
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | || ||||| || || |||| |||||||| ||||| || || |||| ||| |
Sbjct 11042851 ACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGTCGATGGC 11042792
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 11042791 GTTTATTTGA 11042782
Score = 105 bits (116), Expect = 8e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| || || ||||||||||| || |||||| || | || || || || ||||| |
Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| ||| || |||||||||||||| ||||| || || || ||||| || | | || |
Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
|||| | |||||||| | || ||||||| | |||| | || || ||||
Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | ||||| || |||| |
Sbjct 11037062 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACG 11037003
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || ||||| || ||||| || | ||| |||||| | | ||| || |||||||
Sbjct 11037002 CTGCTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 11036943
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 11036942 AGGCTCCAGGTAAATAGC 11036925
>seq21
Length=21368495
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 10317095 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 10317036
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447
||||| ||||||| ||| || |||||||| ||||| || |||||||| ||||||||||||
Sbjct 10317035 AGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCA 10316976
Query 33448 A 33448
|
Sbjct 10316975 A 10316975
Score = 84.2 bits (92), Expect = 3e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||| |||||||| || ||||| ||||||||||||||||| || || | || ||||
Sbjct 10311329 CCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 10311270
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796
|||| || ||||||| | | || || ||||| | | || ||| |||||||
Sbjct 10311269 AATACTTCTCGTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTAGATA 10311219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622771926018440
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