Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq347 221 2e-52 seq10 147 3e-30 seq25 132 6e-26 seq74 131 2e-25 seq21 123 3e-23 >seq347 Length=3625835 Score = 221 bits (244), Expect = 2e-52 Identities = 591/889 (66%), Gaps = 17/889 (2%) Strand=Plus/Minus Query 33002 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33061 |||||||||| | | || ||| | || | || || || | ||||| || ||||||| Sbjct 2989063 TAACTCCCATCTGCCGATACTCATCTACTCTCTTCTCAAAGTAGTTAGTCTTCCCTTCCA 2989004 Query 33062 ATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA 33121 |||| ||||| || | || ||||| |||| || || | || ||||| |||| Sbjct 2989003 ATGAAATATTCTCTGTAAAGTCAAATGGATCTTCTACCTTGAGCACCTTGTTAAAACCCA 2988944 Query 33122 ATT-CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTC 33180 || ||| | ||||| || || |||||||| || || | ||||| | | |||| Sbjct 2988943 GTTTCAGCCTT-AATCTGTCTGCCACGAATTCAATGTACCTCTTCATTAAAGTGCGATTC 2988885 Query 33181 ATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCA 33240 |||| ||||| || | | | ||| |||| ||| | || ||| | || ||| Sbjct 2988884 ATTCTGATAAGCTTCATAGACAAGGCCTTAGTAGGAACTCCTA-TTCTGTCCTAACAGCA 2988826 Query 33241 TCTGTTATAATAGATCTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACA 33298 | | || || | | || | ||| | || ||| || | | | || |||| Sbjct 2988825 TTAATAATTATTTCTTTTAC--TCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACA 2988768 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 | | || | || || ||||| |||||| ||||| |||| ||||| |||||||| | Sbjct 2988767 TTAGGCAGGTAAAGTCACAGTGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATG 2988708 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 |||| || ||||| | || || || || || ||||| || || || || ||| || Sbjct 2988707 TGAGGCCAGGCATCAATCCTTATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAA 2988648 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGCTGTC 33476 ||||||| |||||||||| || || | || ||||| ||| | | | |||| Sbjct 2988647 AGAAGATGT-TTCTACTGCA---AAAGCTACAACATGCTCTCTATAGTAGCTTCTTTGTC 2988592 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 ||||| | | |||||||| | |||| ||||||||||| ||| |||| ||||| Sbjct 2988591 CCCAATCCAATGTAAGGCCCAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGC 2988532 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | |||||| | | |||| ||| ||||||| | ||| || | | |||||||| Sbjct 2988531 CCTGAAGAGAAATTCCCTTTCCTTAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATA 2988472 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 |||||| ||| |||||||| | ||| || ||||| | ||||| || | || || || Sbjct 2988471 CATTTCAGAACATATGTTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGT 2988412 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 |||||| |||||| | || | | ||| ||| ||||| ||| || || ||||| | Sbjct 2988411 AATCTGAACTTCTTGGCTAAGT-GCTCCATCAAGTTTTCTGTCAGCATGCCATCACTTGT 2988353 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 |||||| || | || |||||| |||||||||||| | || || || ||| Sbjct 2988352 TGCAAAGAA-GTCAGAACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCA 2988294 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | || ||||| || | ||| || || || |||| ||||| || ||||| || || Sbjct 2988293 GTGCTGAATGTCTTTGGAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTT 2988234 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAA-ATAACAAA 33884 |||||||| | ||| || |||| |||| ||| | ||| || ||||| Sbjct 2988233 CTTATACATTTGCCAAATATCATGGTATT-AATTAGAAAAGATGACAAA 2988186 >seq10 Length=25572408 Score = 147 bits (162), Expect = 3e-30 Identities = 287/420 (68%), Gaps = 13/420 (3%) Strand=Plus/Plus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 ||| | ||||| || | || || || ||||| | ||| || ||||| ||||| | || Sbjct 5064964 TGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAATAAATTAA 5065022 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 |||||||| ||||| || ||||| | || | || || ||| | ||||| | | || Sbjct 5065023 TTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAA 5065082 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 || |||||||||||||| | ||||| | | ||||||| || |||||||| Sbjct 5065083 GAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCCATT---- 5065138 Query 33469 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 |||| ||| | ||| || |||||||| ||||| |||||| || || Sbjct 5065139 ----TGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCAAGGCGTCATT 5065194 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 | || |||| || || | | |||| || |||||||| ||||| || || | Sbjct 5065195 TTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGG 5065254 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA-AACATCT 33647 |||||||||||||| ||||| |||||||| || || || || | | |||| |||| Sbjct 5065255 AGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTGGATGC--TAGAGAACA-GA 5065311 Query 33648 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCC 33707 || || |||||||| | |||| |||| | | | ||||||||||||||||||| || Sbjct 5065312 GGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATTCACTATGCC 5065371 >seq25 Length=20042899 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||||| || || || | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||||||||| ||||||| Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 6229172 CTACAACACGCTCTCC 6229187 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 |||| ||| |||||||| || || || || | ||||||||||||||| ||||| |||| Sbjct 6231259 TTTCTTTAGAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 6231318 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 |||| ||||| || || || || ||||| || | ||| || |||||||| |||||| | Sbjct 6231319 TTTCCATGGCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGC 6231378 Query 33674 AAAATCGTTCCGCC 33687 |||||| ||| || Sbjct 6231379 TAAATCGCTCCACC 6231392 >seq74 Length=12003515 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 11048364 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 11048305 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || ||||||||||| ||||| ||||| || |||| | |||| Sbjct 11048304 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAA 11048245 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 11048244 CTGTTTCTTACACCATA 11048228 Score = 109 bits (120), Expect = 7e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || || || || | | || ||||||||||||||| || || | || || | Sbjct 11042971 CATAGGTTTCATACGGGCCATGGTCCTTAGCTAGTTCACAACTGGCTTCCAGGGCTCCAT 11042912 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| || |||| |||||| | ||| || || | || ||||| |||| Sbjct 11042911 AATAAATGGTTTCAAAAATCTGCTTATTCAATAATTGGGCCTCTGGACTCTCAAAAGGAT 11042852 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | || ||||| || || |||| |||||||| ||||| || || |||| ||| | Sbjct 11042851 ACCTCATCAGGATAAAAGCATCTGCTAGACCTTGAACCCCAATTCCAATTGGTCGATGGC 11042792 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 11042791 GTTTATTTGA 11042782 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || ||||||||||| || |||||| || | || || || || ||||| | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || |||||||||||||| ||||| || || || ||||| || | | || | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 |||| | |||||||| | || ||||||| | |||| | || || |||| Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 11050847 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | ||||| || |||| | Sbjct 11037062 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAATAGGTCCCTGGCACG 11037003 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || ||||| || ||||| || | ||| |||||| | | ||| || ||||||| Sbjct 11037002 CTGCTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAAATGTCTAAATGCCA 11036943 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 11036942 AGGCTCCAGGTAAATAGC 11036925 >seq21 Length=21368495 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 10317095 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 10317036 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| ||||||| ||| || |||||||| ||||| || |||||||| |||||||||||| Sbjct 10317035 AGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCA 10316976 Query 33448 A 33448 | Sbjct 10316975 A 10316975 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || ||||| ||||||||||||||||| || || | || |||| Sbjct 10311329 CCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 10311270 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || ||||||| | | || || ||||| | | || ||| ||||||| Sbjct 10311269 AATACTTCTCGTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTAGATA 10311219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622771926018440