Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq74 96.9 9e-15 >seq74 Length=12003515 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 11038384 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCATACATG 11038443 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 11038444 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 11038503 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || | | ||||| ||| Sbjct 11038504 AGCAACCTGTGCACGGAAGTAGTAGAATATACC 11038536 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| |||||||| || || |||||| ||| || ||||||||||| ||||| | Sbjct 11036916 GGGGCATTTGCTATTTACCTGGAGCCTTGGCATTTAGACATTTTTGAGTTCCTTGATTTA 11036975 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||||||||| || || |||||| | || || |||| || |||||| || Sbjct 11036976 AAGAAGAACACGGGAAAGGAAGAGCAGCGTGCCAGGGACCTATTCTTCGCCCTTTGGATT 11037035 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || ||||| || |||||| Sbjct 11037036 CCAGATCTCTTCATGAAACGAGTGGAG 11037062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302977717302038