Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48 113 4e-20 seq139 98.7 9e-16 seq101 84.2 2e-11 >seq48 Length=15315231 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || |||||||| || || ||||||| || || ||||| || || Sbjct 866193 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCG 866134 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || | ||||||||| |||||||| ||||| ||||| ||| || |||| Sbjct 866133 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTG 866074 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || ||| ||| | || | ||||| ||| ||||| || || || Sbjct 866073 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTC 866014 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 866013 TTCACGAAAATCTGCAT 865997 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || |||||||| || || ||||||| || || ||||| || || Sbjct 865965 GTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 865906 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || | ||||||||| |||||||| ||||||||||| ||| || |||| Sbjct 865905 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 865846 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || ||| ||| | || | ||| | || |||||||| | || Sbjct 865845 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGTC 865786 Query 131218 TTTACGAAAATCTG 131231 || ||||| ||||| Sbjct 865785 TTCACGAAGATCTG 865772 >seq139 Length=8626845 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||||||||| || || || ||||| || Sbjct 1931032 CCACCCCTCAGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAA 1930973 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||||||||| |||| | | ||||||||| || || Sbjct 1930972 AGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1930913 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 1930912 ATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 1930853 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || ||||| || |||||||| |||||||| Sbjct 1930852 TCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCAT 1930806 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | || | ||| ||||| || || || ||||| || Sbjct 1931260 CCACCCCTCAGACGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAA 1931201 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||| ||||| ||||| Sbjct 1931200 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGA 1931141 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 1931140 ATACCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACC 1931081 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 1931080 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || || || || | || | ||| ||||| || || |||||||| || Sbjct 1931490 AGCCACCCCTCAGGCGAAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAG 1931431 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || || || || |||||||||||||| |||| | | ||| ||||| |||| Sbjct 1931430 AAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAG 1931371 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || |||||||| || ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 1931370 GAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCA 1931311 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 1931310 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 >seq101 Length=10068975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||||||||||||||| || || ||| || || || || |||||||| || || Sbjct 9126727 TCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAG 9126668 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | | |||||| || ||||| |||||||| || || ||| || ||| | | Sbjct 9126667 ATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 9126608 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||||| | || || | |||| || | ||| || || |||| |||||||| Sbjct 9126607 TCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGGGTTTTTACA 9126548 Query 131224 AAAATCTGCAT 131234 |||||||| || Sbjct 9126547 AAAATCTGTAT 9126537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471879993298560