Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq662 91.5 1e-13 seq48 91.5 1e-13 seq139 89.7 4e-13 >seq662 Length=1284721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780 ||||| |||| |||||||||||||| || || |||| |||||| | || ||| | Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840 || |||| ||||| || ||| | || | || ||| ||||| ||| | ||| || || Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 16841 TC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGA 16898 || || ||||| ||| || | | | ||||| | |||||| ||| | | | | Sbjct 540009 TCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAA 540066 Query 16899 TGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || | |||||| || || ||||| ||||||||| Sbjct 540067 TGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq48 Length=15315231 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | || ||| | || Sbjct 865980 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCT 865921 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||| |||||| | || | || ||| ||||| ||| | ||| |||||||| Sbjct 865920 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 865861 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| ||| | |||||| | Sbjct 865860 TGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTG 865803 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTG 16932 | || ||||||| || || || || ||||| Sbjct 865802 TCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | || ||| | || Sbjct 866208 AGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 866149 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||| || ||| | || | || ||| ||||| ||| | || || ||||| Sbjct 866148 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCT 866089 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | ||||| | |||||| ||| | ||| |||| Sbjct 866088 TGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGG 866031 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || ||||| || || || |||||||||||| Sbjct 866030 TCTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| | || Sbjct 866998 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 866939 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| ||||| || ||| | || | || ||| ||||| ||| | ||| || || || Sbjct 866938 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 866879 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| ||| || | | | ||||| | ||||| ||| | |||||| Sbjct 866878 TTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATT 866821 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||||||| || || || || ||||||||| Sbjct 866820 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq139 Length=8626845 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||| || || ||||||||||| | | || | | || |||| || Sbjct 1931464 TGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGC 1931405 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||||||||| ||| | || ||||| || || || Sbjct 1931404 TTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTG 1931345 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | || || | ||||||| |||| ||||||||| || || | Sbjct 1931344 GC--CTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 1931287 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || ||||| |||||||| Sbjct 1931286 TCAGGGTCTTCACAAAGATCTGCAT 1931262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404976872841910