Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 3e-13 seq43 87.8 1e-12 seq101 82.4 5e-11 >seq3 Length=36858092 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| ||||| ||||| Sbjct 12847234 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCTT 12847175 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 12847174 GCCGGTATTTAGCCTTA 12847158 >seq43 Length=16605402 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 7959828 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTC 7959771 >seq101 Length=10068975 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | || ||||||| ||||||||||| ||||| |||||||| |||| | || Sbjct 9126749 CAACATGAGATAAAGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATC 9126690 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 9126689 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 9126630 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || || || Sbjct 9126629 CTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGT 9126570 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||| | | |||||| || || ||||| || Sbjct 9126569 CTTTCCCATTAGGGTTTTTACAAAAATCTGTAT 9126537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334855314457979