Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq139 114 1e-20 seq48 114 1e-20 >seq139 Length=8626845 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| | | Sbjct 1931034 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931093 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| || |||||||| ||||| ||||||||| Sbjct 1931094 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931153 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| |||||| | || |||||| Sbjct 1931154 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1931213 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 1931214 ATCCAGAAAGAGTCAACCCTGCA 1931236 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| | | Sbjct 1931262 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931321 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| || |||||||| ||||| ||||||||| Sbjct 1931322 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931381 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| || ||| | || ||||| Sbjct 1931382 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 1931441 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 1931442 ATCCAGAAAGAGTCAACCCTGCA 1931464 >seq48 Length=15315231 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 25002 CAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGAC 25061 || || || || ||||| ||||||||||| | ||||| | ||||| ||| | |||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 25062 ACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || || ||| | ||| ||| ||| ||||||||||| || || |||||||| ||| Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAG 865891 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | || ||||| || ||||| | ||||||| ||||| || || ||||| || Sbjct 865892 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATC 865951 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||||| || || | || || | || ||||| |||| Sbjct 865952 CAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTGAGAGGGGGAA 865997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433209125806835