Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 4e-15 >seq25 Length=20042899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | | |||||||||||||||||| |||||||| ||| Sbjct 6229072 TCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGCCAGAATATTGATGCA 6229131 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || ||||| || |||||||| || |||| ||| || Sbjct 6229132 AAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCTACAACACGCTC 6229184 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 6231267 GAATCTTTAATGTACGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 6231326 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || ||||| || | |||||| || ||||| |||||||| ||||| | Sbjct 6231327 GCAATTTGGAAGCCATAGAAGCAGCGAGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 6231386 Query 93473 TCTAC 93477 || || Sbjct 6231387 TCCAC 6231391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556704120253160