Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq368 140 3e-28 seq48 107 2e-18 seq113 96.9 3e-15 seq101 93.3 4e-14 >seq368 Length=3467158 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || || | || || || |||||||||| ||||| ||| Sbjct 925143 AGATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCA 925202 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| |||| || ||||| ||||| |||| ||||||||| ||||| || || | Sbjct 925203 GTGACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACC 925262 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || |||| |||||| || |||||||| ||| | |||| ||||||| Sbjct 925263 AGCAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACA 925322 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 925323 ACATCCAGAAAGAGTCCACC 925342 >seq48 Length=15315231 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || | || |||||||| || ||| Sbjct 865997 ATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAGT 866056 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| ||||| || || || || Sbjct 866057 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCAG 866116 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 866117 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 866176 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 866177 ATCCAGAAAGAGTCCAC 866193 >seq113 Length=9792114 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| | || ||||| || || | || || || || ||||||| | || || ||| Sbjct 4493644 AGATGTAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCAAGGTTGATCCCA 4493585 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | | || ||||| ||||| |||||||||||||| || || || || | Sbjct 4493584 GTGACACCATCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACC 4493525 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || |||| |||| ||| | |||||| || ||| |||| ||| ||| Sbjct 4493524 AGCAGCGACTGATTTTTGTGGGCACACAACTGGAGGATGGCCACACACTCTCAGATGACA 4493465 Query 22397 ACATTCAAAAAGAATCCACCA 22417 ||| || ||||| ||||||| Sbjct 4493464 ACACACAGAAAGAGTCCACCA 4493444 >seq101 Length=10068975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||| || |||||||| ||||| ||| || || || | ||||| || || ||| || Sbjct 9126535 AGATACAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCT 9126594 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | || || | || || || || || ||||| || ||||| || |||| Sbjct 9126595 CAGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATC 9126654 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || ||||| ||||| || | || ||| || ||| | || || |||| Sbjct 9126655 AGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACA 9126714 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||||||||| |||| ||| Sbjct 9126715 ACATTCAAAAGGAATACAC 9126733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419612856673585