Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq48 178 2e-39 seq662 158 2e-33 seq139 156 8e-33 seq368 120 6e-22 seq163 111 3e-19 seq113 104 4e-17 >seq48 Length=15315231 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||||||||| |||||||| || || || Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| ||||| || || || | || || ||||| || || Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||| |||||||||||||| ||| |||||||| | |||||| Sbjct 866892 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACT 866833 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || |||||||| ||||| ||||||||| Sbjct 866832 TCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 Score = 176 bits (194), Expect = 8e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || | ||||||||| Sbjct 866205 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 866146 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| |||||||| || || | || || ||||| || || || |||||||||||||| Sbjct 866145 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 866086 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| |||||||| | |||||||| | ||| ||||| || Sbjct 866085 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTA 866026 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || |||||||| ||||| ||||||||| Sbjct 866025 CCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || | ||||| | |||| ||| || ||||||||||| |||||||| || || | Sbjct 865997 TTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 865938 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||||||| | ||| ||||| || || || | || || ||||| || | Sbjct 865937 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAG 865878 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||| |||||||| |||||||||||||| ||| |||||||| | |||| Sbjct 865877 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 865818 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 |||| | |||||| || || || || | |||||| ||||| ||||| Sbjct 865817 CTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || || ||||||||||||||||| |||||||||||||| ||| ||| Sbjct 865662 CTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATG 865603 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | |||||||| | ||| ||||| || || || |||||||| || || ||| Sbjct 865602 GTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACAAAGATC 865543 Query 68457 TGCATT 68462 |||||| Sbjct 865542 TGCATT 865537 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || || ||||||||||||||||| |||||||||||||| ||| ||| Sbjct 866349 CTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATG 866290 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | |||||||| | || ||||| || || || |||||||| ||||| || Sbjct 866289 GTGTCACTGGGCTCTACTTCAAGAGTAATGGTCTTACCGGTCAGGGTCTTCACGAAGATT 866230 Query 68457 TGCATT 68462 |||||| Sbjct 866229 TGCATT 866224 >seq662 Length=1284721 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| |||||||||||||| ||||||| || || || || || | |||||||| Sbjct 539895 ACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCATCTTCC 539954 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| || || || | || || ||||| || || ||||||||||| ||||| Sbjct 539955 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGG 540014 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| |||||||| | |||||||| | | | ||||| || Sbjct 540015 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATGGTCTTA 540074 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || |||||||| || || ||||||||| Sbjct 540075 CTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq139 Length=8626845 Score = 156 bits (172), Expect = 8e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || |||||||| ||||| || || || || || || | |||||||| ||||| Sbjct 1931009 GTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTG 1930950 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| || || ||||| || ||||||||||| || ||||| ||||| Sbjct 1930949 CTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTT 1930890 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || ||||||||| || | || || |||| ||||||||| || || || Sbjct 1930889 AGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGT 1930830 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||| ||||| |||||||| Sbjct 1930829 TAGGGTCTTTACGAAGATCTGCAT 1930806 >seq368 Length=3467158 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||||||||| |||||||| ||||| ||||| | | ||||| |||| || Sbjct 925348 GTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTC 925289 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || | || || || | || ||||| || |||||||| |||||| |||| || || Sbjct 925288 TTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTT 925229 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || ||||| ||| |||||||| | || || || | |||||||| || ||| | Sbjct 925228 GGCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTT 925169 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||| Sbjct 925168 CAAGGTCTTCACAAAGATCTGCAT 925145 >seq163 Length=7758102 Score = 111 bits (122), Expect = 3e-19 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || ||||| ||| Sbjct 3639 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTTTCC 3580 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC----TTGTC 68368 | ||| || || || || || | || || |||| |||||||||||| ||||| Sbjct 3579 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGCCTTCCTTCTTTGTC 3520 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||||| |||||| || ||||||| | |||||||| | |||||| || Sbjct 3519 TTGGATCTTTGACTTGACATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTGATTGT 3460 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | | || |||||||| | ||| ||||| ||| Sbjct 3459 CGTACTGGTCAGGGTCTTCATGAAGATCTGTATT 3426 >seq113 Length=9792114 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||||||||| || |||| | ||| |||||||| ||||| || | || | || Sbjct 4493446 GTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCATCCTCCAGTTGTGTGCCC 4493505 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 | || || |||| || ||||| || || ||||| ||||||||||| || || || ||| Sbjct 4493506 ACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTG 4493565 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || ||||||||| | || || | | |||||||| || ||||| |||||| Sbjct 4493566 ACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGTCTTGCCCGTCAGGGTC 4493625 Query 68445 TTGACGAATATCTGCAT 68461 || || || |||| ||| Sbjct 4493626 TTCACAAAGATCTACAT 4493642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921363090017480