Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 4e-15 >seq13 Length=23775791 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| || ||||||| |||||| | ||||||||||||| ||| | Sbjct 21044046 AGGGTTACCTGGGTTGCCAAGCTTTGTCAGAGATGATCAAGTTCTACCTGGAGGTAGTGA 21044105 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 ||||||||||||| ||||| || | ||| || ||||| || || |||| |||| Sbjct 21044106 TGCCACAGGCTGAGAACCAAAGTCCAAACATCAAGGAGCATGTGAACTCCCTGGGGGAAA 21044165 Query 9981 ATCTAAAGACCCT 9993 | || | ||||| Sbjct 21044166 AGCTGACAACCCT 21044178 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | ||||| |||||||||||||||||||| || |||||||||| Sbjct 21046273 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAATTTGACATCTTCATTAACTACA 21046332 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||| | ||||||||||| || Sbjct 21046333 TAGAAACCTACATGACAATGAA 21046354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552561286219360