Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq139 129 1e-24 seq101 107 5e-18 >seq139 Length=8626845 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1931224 TCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931165 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| | || || ||||||||||||||||| || || ||||| || Sbjct 1931164 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1931105 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 1931104 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1931045 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1931044 AAGATCTGCAT 1931034 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||||| || ||||| || || || ||||| ||| Sbjct 1930996 TCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAG 1930937 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||| ||||| || || ||||| || Sbjct 1930936 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTC 1930877 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| || || || ||||| ||| Sbjct 1930876 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACG 1930817 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1930816 AAGATCTGCAT 1930806 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || || || || ||||| | || || ||||| ||| Sbjct 1931452 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931393 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| | || || ||||||||||||||||| || || ||||| || Sbjct 1931392 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1931333 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 1931332 TCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1931273 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1931272 AAGATCTGCAT 1931262 >seq101 Length=10068975 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 288267 GAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAA 288326 ||||| || ||| ||| ||||| || || ||||| | | || ||||| ||||| | Sbjct 9126743 GAGATAAAGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAG 9126684 Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||| || || || |||||||| | ||| ||| | || |||||||| ||||||||||| Sbjct 9126683 TTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 9126624 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || || || |||||||| | ||| | ||| || ||||| || || ||||| || Sbjct 9126623 CTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCC 9126564 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || ||||| || Sbjct 9126563 CATTAGGGTTTTTACAAAAATCTGTAT 9126537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179314191726102