Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq139 123 2e-23 seq368 120 3e-22 seq101 114 1e-20 seq113 84.2 2e-11 >seq139 Length=8626845 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || || ||||| || | | ||||| | || Sbjct 1931246 AAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATC 1931187 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||| ||||| |||||||| |||||||| || Sbjct 1931186 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 1931127 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | ||||||| || ||||| || | || | ||| Sbjct 1931126 CTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 1931067 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 1931066 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || |||||||| || | | || || | || Sbjct 1931474 AAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1931415 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||| ||||| |||||||| |||||||| || Sbjct 1931414 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATC 1931355 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | ||||||| || ||||| || | || | ||| Sbjct 1931354 CTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGT 1931295 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 1931294 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 >seq368 Length=3467158 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 |||||| | || | || || ||||| || ||||||||||||| || | || | || Sbjct 925356 AGCACTGGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCC 925297 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||| ||||| || |||| || ||||||||||| |||||||| || || || || Sbjct 925296 TCTAGCTCTTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCT 925237 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||||| || |||| || ||||| || | ||| | ||| Sbjct 925236 TGGA-TTTTGGCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGT 925178 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 925177 CTTGCCCTTCAAGGTCTTCACAAAGATCTGCAT 925145 >seq101 Length=10068975 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 |||| || || |||| |||||||||||||| || | | ||| || | ||||| || Sbjct 9126742 AGATAAAGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGT 9126683 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || || | |||||| || |||||||||||||| || || || || Sbjct 9126682 TGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 9126623 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | |||||| || || || || | ||||| |||||| || Sbjct 9126622 TTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCC 9126563 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 | | |||||||| ||||| || || Sbjct 9126562 ATTAGGGTTTTTACAAAAATCTGTAT 9126537 >seq113 Length=9792114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||| ||||| || ||| | | || Sbjct 4493431 AGCACCAGGTGCGTGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCATCC 4493490 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || |||| || |||| || ||||||||||| || || || || || || ||| Sbjct 4493491 TCCAGTTGTGTGCCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 4493550 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | || |||| || || || | | ||| | ||| Sbjct 4493551 TGGA-TTTTGGCTTTGACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGT 4493609 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || | ||| Sbjct 4493610 CTTGCCCGTCAGGGTCTTCACAAAGATCTACAT 4493642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499504218689960