Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq373 167 3e-36 seq37 113 7e-20 >seq373 Length=3354714 Score = 167 bits (184), Expect = 3e-36 Identities = 206/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||||||| || ||||| ||||| || | || || || | ||| | Sbjct 2695058 GGACAGCCCTTCACATTGTTGCAGATGAGAGACTGGATTGAGGCTGTGTTGATGATTTTA 2694999 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| ||||| ||||| ||||| || |||||||| || || || || || Sbjct 2694998 AAACCTACTTCCCCACCGAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACATATAGGATTA 2694939 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 ||||||| ||||||||||| || || || || | || | ||| ||||||| |||||| Sbjct 2694938 CCCATGAGTCCTTTCAAGGAGAATGGTGCTCCTAATTCTACCATGGTCTCACCAAAGATG 2694879 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | ||||| || ||||| || | | | ||| || || || | ||| || | ||| Sbjct 2694878 GCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCAATGTCA 2694819 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || || || ||||| ||||| || |||||||| ||| Sbjct 2694818 CCATACAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCTCCT 2694777 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| ||||||||| | |||||| | ||||||||| ||| ||| | || Sbjct 2691803 TCTTACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 2691744 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 2691743 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 2691684 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || || ||| |||||||||| | ||||||| || || Sbjct 2691683 AGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAG 2691627 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 ||||||||| || | ||||| ||||||||| |||| || ||||| || | ||| ||||| Sbjct 2691017 ACCTTTCACACCCATCGGAGTGGGGCAGTCATGAGGCACAGGAGGAAGGGCTCTGGTATA 2690958 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || ||||| ||||||||||| ||||||||||| | | || || || Sbjct 2690957 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 2690898 Query 10509 GGGACTGTCAATCA 10522 ||||||||||||| Sbjct 2690897 TGGACTGTCAATCA 2690884 >seq37 Length=17483923 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| |||||| || ||||| || |||||||| ||||||||| Sbjct 2520105 GTGGCAGTCTTGACAATGTTGAAACCTGTCTCGCCGCCAAATGTGCTGGGCTTCCAGTAC 2520164 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| ||| ||| || || | |||||| || | ||| | | Sbjct 2520165 TCCGGAGAACAGATGGGATTCCCCAGGAGGCCCTTGAGGGAAAAAGGCGACCCAATTTGT 2520224 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | || Sbjct 2520225 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGATA 2520283 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| || ||||| || |||||||||| || || ||||||||||| Sbjct 2520284 GAACTCCATGGCATCGATATCACCATATAGTTCTTCCAACTCAGCTGCCATCTCCTTCTC 2520343 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 2520344 TCCTACAAG 2520352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723524370080600