Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq139 138 3e-27 seq101 122 2e-22 seq48 122 2e-22 seq662 107 5e-18 seq107 104 6e-17 seq666 98.7 2e-15 seq46 86.0 1e-11 seq7204 84.2 5e-11 seq163 84.2 5e-11 >seq139 Length=8626845 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || ||||| || |||| |||||||||| | ||| | |||||| Sbjct 1931245 AGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1931186 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||| ||||| ||| ||| |||||| ||| Sbjct 1931185 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC 1931126 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 1931125 TGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1931066 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 1931065 TTGCCAGTCAGGGTCTTCACAAAGATCTG 1931037 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 1931473 AGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 1931414 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||| ||||| ||| ||| |||||| ||| Sbjct 1931413 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCC 1931354 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 1931353 TGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1931294 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 1931293 TTGCCAGTCAGGGTCTTCACAAAGATCTG 1931265 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || |||||||| || |||| |||||||||| | ||| | |||||| Sbjct 1931017 AGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1930958 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || |||||||| | ||||||||| || ||| |||||| || Sbjct 1930957 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCT 1930898 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | || || |||| ||||| ||| Sbjct 1930897 TGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1930838 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 1930837 TTGCCTGTTAGGGTCTTTACGAAGATCTG 1930809 >seq101 Length=10068975 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 ||||| | |||||||| | ||||||||||| ||| || | |||||||||||| ||||| Sbjct 9126736 AGAGTGTATTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTG 9126677 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || | |||||| || ||| ||||||||| ||||| ||||| | Sbjct 9126676 CCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC 9126617 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || ||| | || |||| | ||| || || | || || ||||| ||| | || Sbjct 9126616 TTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGG 9126557 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| |||||||| || Sbjct 9126556 GTTTTTACAAAAATCTG 9126540 >seq48 Length=15315231 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| ||||| || |||| ||||||||||| || || | |||||| Sbjct 866998 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 866939 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || ||||| | | ||||||||| ||| || ||||| || Sbjct 866938 TTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 866879 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || || | |||||| | | ||||| || | ||||| || Sbjct 866878 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGT 866819 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || || ||||| || || || Sbjct 866818 CTTACCGGTCAGGGTCTTCACGAAGATCTG 866789 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| ||||| || |||| ||||||||||| || || | |||||| Sbjct 866208 AGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 866149 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| ||||| | | ||||||||| ||| || ||||| || Sbjct 866148 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCT 866089 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||||| || | || || ||| Sbjct 866088 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTC 866029 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| || Sbjct 866028 TTACCAGTCAGGGTCTTCACGAAAATCTG 866000 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||| | || || | |||||| Sbjct 865980 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCT 865921 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| | | ||||||||| ||| || |||||| || Sbjct 865920 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 865861 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||||| || | ||||| ||| Sbjct 865860 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 865801 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 865800 TTACCGGTCAAGGTCTTCACGAAGATCTG 865772 >seq662 Length=1284721 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||||||| | ||| || || ||||| || |||| || |||||||| || || | |||| Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||||||| || || || ||||| | | ||||||||| ||| || ||||| Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || || |||||| ||| || || | |||||| | | ||||| || | | || Sbjct 540009 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATG 540068 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || || || |||||||| || || Sbjct 540069 GTCTTACTGGTCAGGGTCTTCACAAAGATCTG 540100 >seq107 Length=10112982 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| |||||| ||||| |||||||||| | ||||||||||| ||| | Sbjct 238105 AAGTCTCAACACAAGGCAAAGAGTGCACTCCTTTTGAATGTTGTAGTCAGACAAGATATA 238164 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || |||||||| || | |||||| || ||| ||||||||| Sbjct 238165 TCCATCTTCCAGTTGCTTACCAGCGAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 238224 >seq666 Length=1230470 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || ||| |||| || |||| ||||||||||| | | | | |||||| Sbjct 1199726 AGAACAAGATGCAGGGTCCACTCTTTCTGGATGTTGTAGTCAGAAAGAATGCGGCCATCT 1199667 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||| | ||| |||||||| | || |||||| || ||| ||| || ||| Sbjct 1199666 TCTGGCTGCTTGCTGGCAAAGATGAGCCTCTTCTGGTCAGGGGGAATGCCTCCTTCATCC 1199607 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| | | || | | || | |||| ||||| ||| Sbjct 1199606 TGGATCTTAGCCTTCACATTCTCGATGATATCACTGGGCTCCATCTCCAGGGTGATGGTC 1199547 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || Sbjct 1199546 TTGCCTGTTAGGGTCTTTACAAAGATCTG 1199518 >seq46 Length=16346842 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 || ||||||| | ||||||||||| ||| || | |||||||||||| ||||| || || | Sbjct 1673982 ACACCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAA 1673923 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| || | |||||| || ||| ||||||| Sbjct 1673922 AGATCAGTCTCTGCTGATCAGGAGGAATTCCT 1673891 >seq7204 Length=5687 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||| | || |||| ||| | ||||||||||||| |||| ||| | | Sbjct 3954 AAGTCTCAACACAGGCTGAAGAGAGGACACTTTTTGGACGTTGT--TCAGACAAGGAGCG 4011 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||| |||| ||||| || |||||| | |||| ||||||||| | | || | || | Sbjct 4012 CCCATCTGCCAGTTGCTTGCCAGCGAAGCTTAGACTCTGCTGGTCAGAAGGAACTTCTGC 4071 Query 199531 TCGCTCCTGAATCTT 199545 | ||||| ||||| Sbjct 4072 TGTGTCCTGGATCTT 4086 >seq163 Length=7758102 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||||| || || |||| | Sbjct 3642 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTT 3583 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT---CCGGAA-AAATTCCTTCTCG 199533 |||||||| ||||| || ||||| | | |||||||| |||| |||||||| Sbjct 3582 TCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGCCTTCCTTCTTT 3523 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || |||||| ||| || |||| | ||||| | | ||||| || | ||| Sbjct 3522 GTCTTGGATCTTTGACTTGAC--ATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTG 3465 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCA 199616 || ||| ||| || || || |||| Sbjct 3464 ATTGTCGTACTGGTCAGGGTCTTCA 3440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178581603063103