Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq139 104 3e-17 seq368 89.7 6e-13 >seq139 Length=8626845 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| || |||||||| | || || ||||||||||| || || Sbjct 1931225 CTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1931166 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | || || ||| |||||| ||| | | Sbjct 1931165 GATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATT 1931106 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 1931105 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1931046 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 1931045 AAAGATCTGCAT 1931034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| || |||||||| | || || | ||||||||| || || Sbjct 1930997 CTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAA 1930938 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || || || || |||||| ||| | | Sbjct 1930937 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTAGCCTTCACATT 1930878 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | ||||| |||| |||||||| ||||| || || || || || Sbjct 1930877 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTAC 1930818 Query 46582 AAAGATTTGCATTTTG 46597 ||||| ||||| ||| Sbjct 1930817 GAAGATCTGCATCTTG 1930802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||| || | || || ||||||||||| || || Sbjct 1931453 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 1931394 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | | || || ||| |||||| ||| | | Sbjct 1931393 GATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATT 1931334 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 1931333 CTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1931274 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 1931273 AAAGATCTGCAT 1931262 >seq368 Length=3467158 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || ||| | || | || || |||| ||||| | || Sbjct 925336 CTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCTTTGCCCTCAAA 925277 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||||| | ||| || |||| | Sbjct 925276 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTGGCTTTGACATT 925217 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | ||| ||||| || | ||||| || | |||||||| |||||| ||| || || || Sbjct 925216 CTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAGGTCTTCAC 925157 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 925156 AAAGATCTGCAT 925145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565079363110680