Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq48 114 1e-20 seq139 100 3e-16 seq368 91.5 1e-13 seq662 82.4 8e-11 >seq48 Length=15315231 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || ||||| ||| | || || ||| ||| Sbjct 865996 AATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 866055 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || || || | ||||| Sbjct 866056 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCA 866115 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 866116 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 866175 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || ||| ||||||| || Sbjct 866176 CATCCAGAAAGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 866223 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || ||||| || || | || || || || |||||| | || || ||| ||| ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | | | | | || | ||| |||| |||||||| || || || | ||||| ||| Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAG 865891 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || | || | ||||| ||||||||||| || | ||||||||| |||||||||||| Sbjct 865892 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATC 865951 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || | || ||||| |||| || || ||||||| || Sbjct 865952 CAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTGAGAGGGGG 865995 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || || |||||| | || || ||| | | Sbjct 866785 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAG 866844 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| || || || || || || | ||||| Sbjct 866845 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 866904 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | || ||||| |||||||| Sbjct 866905 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 866964 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| ||||| ||||| ||||| || || Sbjct 866965 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 867012 >seq139 Length=8626845 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1931262 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931321 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || ||||| || ||||| | |||||| Sbjct 1931322 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931381 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | || || || ||||||||| Sbjct 1931382 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 1931441 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| | || || || |||| || ||| Sbjct 1931442 ATCCAGAAAGAGTCAACCCTGCACCTTGTTCTTCGCCTGAGGGGTGGC 1931489 >seq368 Length=3467158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | | |||||| |||||||| | || || ||| ||| Sbjct 925145 ATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 925204 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || | | | |||| ||||||| | ||| ||||| ||||| | ||||| Sbjct 925205 GACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACCAG 925264 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| | ||||||| |||| || || | || | ||| || |||||| Sbjct 925265 CAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACAAC 925324 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | || ||||| Sbjct 925325 ATCCAGAAAGAGTCCACCCTGCA 925347 >seq662 Length=1284721 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || | || ||||| | | | || || ||| ||| Sbjct 540104 AATGCAGATCTTTGTGAAGACCCTGACCAGTAAGACCATTAACCTTGAAGTAGAGCCCAG 540045 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| || || || || || || | ||||| Sbjct 540044 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 539985 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | | ||||| |||||| | Sbjct 539984 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGATGTACCCTGTCTGACTACGA 539925 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 |||||| || || | |||||||| ||||| ||| | ||||| || Sbjct 539924 CATCCAGAAAGAGTCCACGCTGCACTTGGTCCTGAGCTTGAGGGG 539880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500032070130560