Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq294 141 4e-28 seq8 114 5e-20 seq101 100 1e-15 seq48 100 1e-15 seq611 96.9 1e-14 seq662 84.2 9e-11 seq56 84.2 9e-11 >seq294 Length=4342603 Score = 141 bits (156), Expect = 4e-28 Identities = 361/542 (67%), Gaps = 12/542 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| || || ||||||| || ||||| || || | ||| | || || Sbjct 1150713 GCCATCGGCATTGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCACGGCAAG 1150772 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || ||||| ||||| || || || || || | || || || Sbjct 1150773 GTGGAGATCATTGCCAATGATCAAGGCAACCGCACCACCCC--CA--GTTACGTGGCCTT 1150828 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 || || | || | || | ||| | || || || | | | |||| ||| || Sbjct 1150829 CACTGACACCGAGCGGCTCATTGGGGATGCGGCCAAGAACCA-GGTAGCCATGAATCCCC 1150887 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| || ||||| ||||| | | | | ||||| | || | Sbjct 1150888 AGAACACTGTCTTTGATGCCAAGCGTTTGATTGGAAGGAAATTTAATGATCCTGTGGTGC 1150947 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || ||| | ||| | | ||| | | ||| | ||| | || |||||| | || Sbjct 1150948 AATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGATGGGGGTAAGCCCAAGGTTT 1151007 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 ||| || ||||| |||| ||| |||| |||||| ||||| || || ||||| | Sbjct 1151008 TGGTATCGTACAAAGGAGAAAATAAGGCTTTCTATCCTGAGGAAATCTCTTCCATGGTAC 1151067 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTA 451327 | ||||||||||| || || |||||| || | |||| | | | || || |||| || Sbjct 1151068 TGACTAAAATGAAGGAGACTGCAGAAGCAT-TTTTGGGCCACTCTGTCACCAATGCTGTG 1151126 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || || || || || ||||| ||||| | ||||| || || ||||| |||||||| Sbjct 1151127 ATCACCGTGCCAGCCTATTTTAATGACTCTCAACGCCAGGCCACTAAGGATGCAGGTGTG 1151186 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||| || | ||||| || |||| || |||||||| ||||| ||||| | || ||| Sbjct 1151187 ATTGCAGGACTCAATGTACTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCCTAT 1151246 Query 451448 GG 451449 || Sbjct 1151247 GG 1151248 >seq8 Length=26637743 Score = 114 bits (126), Expect = 5e-20 Identities = 356/545 (65%), Gaps = 7/545 (1%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| |||| ||||||||| | ||||||| || ||||| ||||| | ||| | | || Sbjct 3480943 AGCAGTTGGCATTGATCTTAGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCACAGTAA 3480884 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 ||| | || || || ||||| | || | ||| || || | || |||||| Sbjct 3480883 AGTAAAGATAATTGCCAATGATAAGGGCAACCTAACCACCCCAAGCTATGTCGCTTTTAC 3480824 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAA 451090 ||| | ||| | | | || | || || || ||||| ||| ||| ||| Sbjct 3480823 TGATACCGAACAATTGATTGGTGATGCCGCAAAGTATCAAGTTGCAATG--AATCCCACT 3480766 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 |||| | | |||||| ||| || | ||||| || | |||||||| | | | || Sbjct 3480765 AACATGATTTTTGATGCCAAATGTCTCATTGGACGAAGACTTGATGATGCTGTTATCCAG 3480706 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATG-TAGTAAATCAAAAAGGAAAGCCCTATATTCA 451209 || | || || | | | ||| |||| ||| | ||| | |||| | | || Sbjct 3480705 TCTGATATGAAGCACTGGACCT-TCATGGTAGTGAATGATGCAGGCAGGCCCAAGGTCCA 3480647 Query 451210 AGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCT 451269 ||| | || || || ||||| ||| || | ||| || || | |||||||||||||| Sbjct 3480646 GGTAGAATACAAGGGAGAAACCAAAGTTTCTA-TCCAGAGGAGGTATCATCTATGGTTCT 3480588 Query 451270 TACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 || || ||||| |||| |||||| || || | | ||||| |||| || | Sbjct 3480587 GACAAAGATGAAGGAAATTGCAGAAGCCTACCTTAGGAAGACTGTTACCAATGCTGTTGT 3480528 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 |||||| || || || | |||| | | || || || || || |||||||| ||| ||| Sbjct 3480527 TACTGTGCCAGCCTACCTTAATGGTTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTAT 3480468 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 || ||| | ||||| || |||| || ||||| || || || |||||| | || ||||| Sbjct 3480467 TGTTGGCCTCAATGTACTCAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATGG 3480408 Query 451450 ACTAG 451454 | ||| Sbjct 3480407 ATTAG 3480403 >seq101 Length=10068975 Score = 100 bits (110), Expect = 1e-15 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 ||||| || ||||| || | || || || || ||||| || |||||| | || |||| Sbjct 9126543 ATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTCAGATACA 9126602 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || ||| | | || || || || |||||||||||||||||||||||||| || | Sbjct 9126603 ATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGA 9126662 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || | || || ||||| ||||||||| | || ||| | || || || ||| | Sbjct 9126663 CTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAACATTCAA 9126722 Query 391236 AAGGA 391240 ||||| Sbjct 9126723 AAGGA 9126727 >seq48 Length=15315231 Score = 100 bits (110), Expect = 1e-15 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || ||||||||||| || ||||| ||||| || || | Sbjct 865996 AATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 866055 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || ||| || ||||| |||||||| || |||||||| || Sbjct 866056 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCA 866115 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | |||||||| || |||||||| | || || | || || || Sbjct 866116 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 866175 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | || || | || || ||| | || | | |||||||| Sbjct 866176 CATCCAGAAAGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGG 866220 Score = 95.1 bits (104), Expect = 5e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || ||||| ||||| || || || ||||| || || | Sbjct 866785 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAG 866844 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || ||| || |||||||||||||| || |||||||| || Sbjct 866845 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 866904 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | |||||||| || ||||||||| | || || | || || || Sbjct 866905 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 866964 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || || ||||| || Sbjct 866965 CATCCAGAAAGAGTCCACTCTGCACTTGGT 866994 >seq611 Length=1445469 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| || || |||||||| Sbjct 532361 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAGCGCCAAGCAACC 532420 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | |||||| | | || || ||||| || Sbjct 532421 AAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCC 532473 >seq662 Length=1284721 Score = 84.2 bits (92), Expect = 9e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||| |||| || |||| ||||| || || | Sbjct 540104 AATGCAGATCTTTGTGAAGACCCTGACCAGTAAGACCATTAACCTTGAAGTAGAGCCCAG 540045 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || ||| || |||||||||||||| || |||||||| || Sbjct 540044 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 539985 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || || | |||||||| || ||||||||| | || || | || || | Sbjct 539984 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGATGTACCCTGTCTGACTACGA 539925 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || | || || ||||| || | || |||| ||| Sbjct 539924 CATCCAGAAAGAGTCCACGCTGCACTTGGTCCTGAGCTTGAGGGGA 539879 >seq56 Length=13994859 Score = 84.2 bits (92), Expect = 9e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||| ||||| || || || | || |||||||| ||||| | ||||||||| Sbjct 3347397 CAGGCCACTAAGGATGCTGGCCAGATATCAGGATTAAATGTGCTTCGGGTGATTAATGAA 3347338 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || ||||| ||||| ||||| ||||| |||| || ||| |||| Sbjct 3347337 CCCACAGCTGCTGCACTAGCCTATGGTCTAGACAAGTCAGAAGA 3347294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975148609604972