Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq48 156 9e-33 seq139 145 2e-29 seq662 122 2e-22 seq368 111 3e-19 seq163 98.7 2e-15 seq6 86.0 1e-11 >seq48 Length=15315231 Score = 156 bits (172), Expect = 9e-33 Identities = 157/203 (77%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | || || | ||||||||| Sbjct 865977 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCC 865918 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| | | || ||||| ||||| ||||||||||||||||| Sbjct 865917 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 865858 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| |||||||||||||| ||| || ||||||||||| | ||| Sbjct 865857 ATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATTGTC 865801 Query 195109 TTTCCTGTCAAAGTTTTTACGAA 195131 || || ||||| || || ||||| Sbjct 865800 TTACCGGTCAAGGTCTTCACGAA 865778 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| |||||||||||||| || || ||||| || | || || | ||||||||| Sbjct 866206 AACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 866147 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| | | || ||||| ||||| || ||||| |||||||| Sbjct 866146 CAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTG 866087 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || ||| |||||| |||||||||||||| ||| || ||||||||||||| || Sbjct 866086 GATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTAATGGT 866030 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || |||| || || ||||| | |||||| Sbjct 866029 CTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 140 bits (154), Expect = 7e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || || ||||| || | || || | |||||||| ||||| Sbjct 866989 GTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGCTG 866930 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | | || ||||| ||||| |||||||| || ||||| || || Sbjct 866929 TTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTT 866870 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| |||||||||||||| | || ||||||||||| | ||||| || || Sbjct 866869 TGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTCTTACCGGT 866810 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | |||||| Sbjct 866809 CAGGGTCTTCACGAAGATCTGCATT 866785 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/126 (78%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| ||||| |||||||| |||||||| || ||| |||||| |||||||||||| Sbjct 866346 TGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTG 866287 Query 195079 TCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || ||| || |||||||| |||| ||||| || |||| || || ||||| | | Sbjct 866286 TC---ACTGGGCTCTACTTCAAGAGTAATGGTCTTACCGGTCAGGGTCTTCACGAAGATT 866230 Query 195136 TGCATT 195141 |||||| Sbjct 866229 TGCATT 866224 Score = 93.3 bits (102), Expect = 9e-14 Identities = 97/126 (77%), Gaps = 6/126 (5%) Strand=Plus/Minus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| ||||| |||||||| |||||||| || ||| |||||| |||||||||||| Sbjct 865659 TGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTG 865600 Query 195079 TCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || ||| || ||||||||||||| ||||| || |||| || || || || | Sbjct 865599 TC---ACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACAAAGATC 865543 Query 195136 TGCATT 195141 |||||| Sbjct 865542 TGCATT 865537 >seq139 Length=8626845 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || |||||||| || |||||||| || | |||||| | |||||||| Sbjct 1931014 ACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1930955 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || | || ||||| || |||||||||||||| ||||| Sbjct 1930954 AACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGG 1930895 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| ||||| || ||| ||||| || ||||| | ||| Sbjct 1930894 ATCTTAGCCTTCACATTCTCGATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTC 1930838 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| | || |||||||| | ||||| Sbjct 1930837 TTGCCTGTTAGGGTCTTTACGAAGATCTGCAT 1930806 >seq662 Length=1284721 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||| || | ||| || ||||||||||| || || | ||| || | || || | ||| Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| ||||| || || || ||||| | | || ||||| ||||| |||||||| || Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTA 195102 ||||| || ||| |||||| |||||||||||||| ||| || ||||||||| || Sbjct 540009 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGTTA 540065 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||| | |||| || || || || | |||||| Sbjct 540066 ATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq368 Length=3467158 Score = 111 bits (122), Expect = 3e-19 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 194936 GGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCT 194995 |||| || ||||||||||| || || |||||||| | ||| | | ||||| || |||| Sbjct 925349 GGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCT 925290 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 || || | || || || || || ||||| ||||||||||| || ||| |||| |||| Sbjct 925289 CTTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTT 925230 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||||| ||||| |||||||| ||| ||||| ||||| || | ||||| | Sbjct 925229 TGGCTTTGACATTCTCCATGGTGTC---ACTGGGCTCCACCTCAAGAGTGATGGTCTTGC 925173 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || || || | ||||| Sbjct 925172 CCTTCAAGGTCTTCACAAAGATCTGCAT 925145 >seq163 Length=7758102 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| || | || || ||||| ||| Sbjct 3639 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTTTCC 3580 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC----CTTCTTTGTC 195047 ||||| || || || ||||| | | || |||| |||||||| |||||||||| Sbjct 3579 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGCCTTCCTTCTTTGTC 3520 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || ||| |||||| |||| |||||||| || ||||||||||| | || Sbjct 3519 TTGGATCTTTGACTTGACATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTGATTGT 3460 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | | | |||| || || | ||| | || |||| Sbjct 3459 CGTACTGGTCAGGGTCTTCATGAAGATCTGTATTT 3425 >seq6 Length=31634872 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCT 194981 |||||||| ||||| |||||||||||||| |||||||| | || ||| | |||| || Sbjct 11568224 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTCGTTATCAGACAAG-GTCTG 11568282 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||| || |||||| | | || ||||| || | || || |||||||| ||| Sbjct 11568283 TCCAAATTGCAGCTGCATGGCAGCAAAGAT--GTTTCTCCTGATCAGGAGGAATTTCTTT 11568340 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||| || || || | || || ||| ||| || ||||| || Sbjct 11568341 CTTGTCTTGGATCTTGGCCTTTACATTTTCTTTTGTATCTGAAGGTTCAACCTCAAGAGT 11568400 Query 195102 AACCGTCTTTCCTGT 195116 | ||||| ||||| Sbjct 11568401 GATGGTCTTCCCTGT 11568415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109161629320403