Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq48 114 8e-21 seq662 113 3e-20 seq139 93.3 3e-14 seq113 87.8 1e-12 seq368 86.0 4e-12 >seq48 Length=15315231 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| ||||| || || || | |||| | ||| | Sbjct 866892 ATGCCTTCCTTATCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTAGGCTCTA 866835 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || || || || || |||||||| ||||||||||| Sbjct 866834 CTTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | | ||||| ||| | ||| |||||||| ||||| ||||| | Sbjct 866225 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 866166 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || |||| ||||||||||| |||||||| || | | |||||||| | | Sbjct 866165 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 866106 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||||| ||||| || || || | |||| || ||| Sbjct 866105 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 866048 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || |||||||| || |||||||| Sbjct 866047 TACTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCAT 865997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||||||| ||| | || |||| ||| Sbjct 865977 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCTTCC 865918 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || | | |||||||| | || | || || ||||| Sbjct 865917 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 865858 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| || || | Sbjct 865857 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCT 865800 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTG 34978 | || || | |||||||| |||||||| Sbjct 865799 TACCGGTCAAGGTCTTCACGAAGATCTG 865772 >seq662 Length=1284721 Score = 113 bits (124), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34756 CTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAA 34815 |||||||||| |||| |||||||| | ||| |||||||| |||| ||||| || | Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 34816 GGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCA 34875 || | | | |||| ||||||||||| || ||||| || | | |||||||| | || | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 34876 CCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAAC 34933 || ||||| || ||||| ||||| || || || | |||| || ||| || Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTAC 540055 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | | | ||||| || | || || |||||||||||||||||||| Sbjct 540056 TTCAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCAT 540103 >seq139 Length=8626845 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 1931452 TCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931393 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | || || || || ||||| || || || Sbjct 1931392 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 1931335 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 1931334 TCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 1931275 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1931274 CAAAGATCTGCATA 1931261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 1931224 TCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1931165 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | || || || || ||||| || || || Sbjct 1931164 ATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 1931107 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 1931106 TCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 1931047 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 1931046 CAAAGATCTGCATA 1931033 >seq113 Length=9792114 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| |||| | || || || | | |||| ||| Sbjct 4493434 ACCAGGTGCGTGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCATCCTCC 4493493 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||| | || |||| || ||||| |||||||| | || | ||||||||||| Sbjct 4493494 AGTTGTGTGCCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 4493553 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||||| | || || ||||| | Sbjct 4493554 ATTTTGGCTTTGAC--ATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGTCT 4493611 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||| ||| Sbjct 4493612 TGCCCGTCAGGGTCTTCACAAAGATCTACAT 4493642 >seq368 Length=3467158 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || || | || |||| || |||| ||| || |||| Sbjct 925335 TCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCTTTGCCCTCAAAA 925276 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||| | || || |||||| || Sbjct 925275 ATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTGGCTTTGAC--AT 925218 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | || ||||| || ||| | | ||||||| Sbjct 925217 TCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAGGTCTTCA 925158 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 925157 CAAAGATCTGCAT 925145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324544543771752