Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq25 120 3e-22 seq10 113 5e-20 seq74 93.3 5e-14 seq21 84.2 2e-11 >seq25 Length=20042899 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||| | ||||| ||| | Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||||||||||||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 19103 CAAC 19106 | || Sbjct 6229172 CTAC 6229175 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| |||||| | ||||||||||||| || || || ||| |||||||| Sbjct 6227473 TTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTG--TTGGACTTGACATCACTCCCATC 6227530 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 6227531 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 6227590 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||| | ||| Sbjct 6227591 TCCATAAAGTCAAATGGATTCTCTAC 6227616 >seq10 Length=25572408 Score = 113 bits (124), Expect = 5e-20 Identities = 284/430 (66%), Gaps = 14/430 (3%) Strand=Plus/Plus Query 18939 TAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTAT 18998 ||| || ||| | ||||| || | ||||| ||||| |||| || || ||||| || || Sbjct 5064957 TAGCAGCTGTGTGAACATTAAGAAAGCAAACTCACAGTGTAAACC-TCATCTCTGCTAAT 5065015 Query 18999 CAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGA 19058 |||| ||| |||||||| | |||||||| | |||| ||| || | | ||||||| | Sbjct 5065016 AAATTAATTGGAAAATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAA 5065075 Query 19059 AGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 | ||| || ||||||||||| |||| ||||| | || |||| || | | ||||| Sbjct 5065076 TGAAAAAGAACCAGAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAACATGCTCTCC 5065135 Query 19119 ATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACA 19178 || || | |||| | || ||| || |||||||| ||||| || Sbjct 5065136 AT-----------TTGTCCCCAATCTAGCACAAGGCCTGATGTGCCTTCTTCTTTACCCA 5065184 Query 19179 TGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGC 19238 ||| | | | ||| ||| || || | | || | | |||||||| || | Sbjct 5065185 AGGCGTCATTTTAATAACATTGAAAGGAAATTCCCTTTCCTTGGAATCTTTAATGTAAGT 5065244 Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 || || | | ||| |||||||| ||||| || ||||| ||||| || || || | Sbjct 5065245 GTCAATAAGGAGACTATACATTTCAGAATGGATGTTTTCCATAGCAATTTG-GATGCTAG 5065303 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 | |||| || ||||| ||||| | ||| |||| | |||||||||||||| Sbjct 5065304 AGAACA-GAGGCATCTGTAATCTGAATTTCTTGGTTAAATTGCTACACCAAATTTTCATT 5065362 Query 19359 AACTATTCCA 19368 ||||| ||| Sbjct 5065363 CACTATGCCA 5065372 >seq74 Length=12003515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||| ||||| || || Sbjct 11048361 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 11048302 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | || | | ||| || Sbjct 11048301 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCCATAAGTAAACTG 11048242 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 11048241 TTTCTTACACCATA 11048228 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | | || Sbjct 11027254 GTACCAGCATTGAAAAGAGTGGGAGAGGCATGAGTAAACCACTTCTCAGAGAGAAGGTTG 11027195 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| || || || ||| || || | |||||| | ||| ||| Sbjct 11027194 TATGTTTCAATAGCAGCATCAATGTCTTCTTCATGAATCCCAACAGATACCCTCATCAAC 11027135 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 11027134 ATATGTTGTGGTCTTTCA 11027117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||||||||||||||| || | ||| || |||| || | ||| || || | Sbjct 11051017 TCCAGCCATAGAAATGCATACTGGTGAGTTTGCCGTAGTTAGGCTCAGCAATGTGGATGT 11050958 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || ||||| || || || ||||| ||||||||||| | | | Sbjct 11050957 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 11050898 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || |||||||| || ||||||| ||| || | ||| || || Sbjct 11050897 TTTGAGAGATTTCCCATACCGTCTTATAAAGTTGCTTCAGGTCATCAGG 11050849 >seq21 Length=21368495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 |||||||| | ||||| ||||||||||||||| ||||| || || || || || |||| Sbjct 10335185 TGATATTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 10335126 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 10335125 ATAAAATCAAAGGGATTTT 10335107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561950643662760