Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq255 91.5 2e-13
seq193 91.5 2e-13
seq632 87.8 2e-12
>seq255
Length=5298548
Score = 91.5 bits (100), Expect = 2e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229
|||| | ||||| || || || ||||||||||| ||| |||||||| || || |
Sbjct 1832353 CGGGCAGTCCTTCGTGCTGCACAAGGCATGTGTATCTCTGCTCCTCTCCAGAGGGAACCA 1832294
Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289
| | |||| |||| || || || |||||||| || ||||| | || || | ||||||
Sbjct 1832293 CCACAGCTGCCCACTTCTGGAAGGTCCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCTG 1832234
Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349
| || || | || || || ||||| || | ||| || | | || || || || || |
Sbjct 1832233 TGTCCTGGGTCTGGTCCTCCCCGTCCCGCTGCCAGGTCAGGGTGATCTCCGCGGGGTAGA 1832174
Query 14350 AACCCAAAGCCCAGCACC 14367
| |||| ||||||||||
Sbjct 1832173 AGCCCAGGGCCCAGCACC 1832156
>seq193
Length=6660286
Score = 91.5 bits (100), Expect = 2e-13
Identities = 222/328 (68%), Gaps = 10/328 (3%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| |||| ||| ||||| ||||| | || ||||| |||||
Sbjct 5133039 GTGTCACAAAGCAGCTCAGTGCCGCAGATGGTGAACGGGGTTTTGGGAGAGTCGGTAACC 5132980
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| |||| | | |||||||| ||||||||||||||| |||| ||
Sbjct 5132979 CTTCCCCTGGAGCTTCCTGAAAGAGAGAAGATTGAGTCCATCACCTGGCTTCACAATGGA 5132920
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCG-GAGGCCAAGAGCCCCCAGATCCACCTAACCAA 2056
|| || ||| || || || | | | || | | ||| || |||| | || |
Sbjct 5132919 ACATCTATCACC-TTCTTACAGCAAAGTGAAACAGGAAACCCACAAGTCCATGTGACTGA 5132861
Query 2057 TCCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAAC 2114
|| |||| | ||| | ||| || || || ||||| | |||| | || || | ||||
Sbjct 5132860 CCCCAAAC--GAAAAGGACAACTGAAATTTACCCAGTCTTGCTCCTTGCAGCTCAACAAC 5132803
Query 2115 CTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCAC-AGTTAA 2173
|| |||||||| | || | ||| |||||| ||| |||| |||| | || ||
Sbjct 5132802 CTGACAATGGAAGATGCAGGATGGTACGGTGCCCAAATGGCCTCAAAGACTTCTAG--AA 5132745
Query 2174 C-GTTTCCAGCTACACGCTGAGGATCTT 2200
| || | | ||||| |||||||||||
Sbjct 5132744 CAGTATACTATTACACTCTGAGGATCTT 5132717
>seq632
Length=1402642
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229
|||| | || ||||| || || | ||||||||| | ||| |||||||| || || |
Sbjct 968257 CGGGCAGTCCCTCATGCTGCACATGGCATGTGTATTTCTGCTCCTCTCCAGAGGGTACCA 968316
Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289
| |||| |||| || || || ||||||| || || || | || || | ||||||
Sbjct 968317 TCACAGCTGCCCACTTCTGGAAGTTCCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCTG 968376
Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349
| || || || | ||||| ||||| | | ||| || | | | || || || || || |
Sbjct 968377 TGTCCTGGGTTAGCTCTTCCCCGTCCCACTGCCAGGTCAGTGTGATCTCCGCTGGGTAGA 968436
Query 14350 AACCCAAAGCCCAGCACC 14367
| |||| |||||||||||
Sbjct 968437 AGCCCAGAGCCCAGCACC 968454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629106143305640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |