Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq255 91.5 2e-13 seq193 91.5 2e-13 seq632 87.8 2e-12 >seq255 Length=5298548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||| | ||||| || || || ||||||||||| ||| |||||||| || || | Sbjct 1832353 CGGGCAGTCCTTCGTGCTGCACAAGGCATGTGTATCTCTGCTCCTCTCCAGAGGGAACCA 1832294 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | |||| |||| || || || |||||||| || ||||| | || || | |||||| Sbjct 1832293 CCACAGCTGCCCACTTCTGGAAGGTCCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCTG 1832234 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || | || || || ||||| || | ||| || | | || || || || || | Sbjct 1832233 TGTCCTGGGTCTGGTCCTCCCCGTCCCGCTGCCAGGTCAGGGTGATCTCCGCGGGGTAGA 1832174 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| |||||||||| Sbjct 1832173 AGCCCAGGGCCCAGCACC 1832156 >seq193 Length=6660286 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| |||| ||| ||||| ||||| | || ||||| ||||| Sbjct 5133039 GTGTCACAAAGCAGCTCAGTGCCGCAGATGGTGAACGGGGTTTTGGGAGAGTCGGTAACC 5132980 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| |||| | | |||||||| ||||||||||||||| |||| || Sbjct 5132979 CTTCCCCTGGAGCTTCCTGAAAGAGAGAAGATTGAGTCCATCACCTGGCTTCACAATGGA 5132920 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCG-GAGGCCAAGAGCCCCCAGATCCACCTAACCAA 2056 || || ||| || || || | | | || | | ||| || |||| | || | Sbjct 5132919 ACATCTATCACC-TTCTTACAGCAAAGTGAAACAGGAAACCCACAAGTCCATGTGACTGA 5132861 Query 2057 TCCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAAC 2114 || |||| | ||| | ||| || || || ||||| | |||| | || || | |||| Sbjct 5132860 CCCCAAAC--GAAAAGGACAACTGAAATTTACCCAGTCTTGCTCCTTGCAGCTCAACAAC 5132803 Query 2115 CTAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCAC-AGTTAA 2173 || |||||||| | || | ||| |||||| ||| |||| |||| | || || Sbjct 5132802 CTGACAATGGAAGATGCAGGATGGTACGGTGCCCAAATGGCCTCAAAGACTTCTAG--AA 5132745 Query 2174 C-GTTTCCAGCTACACGCTGAGGATCTT 2200 | || | | ||||| ||||||||||| Sbjct 5132744 CAGTATACTATTACACTCTGAGGATCTT 5132717 >seq632 Length=1402642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||| | || ||||| || || | ||||||||| | ||| |||||||| || || | Sbjct 968257 CGGGCAGTCCCTCATGCTGCACATGGCATGTGTATTTCTGCTCCTCTCCAGAGGGTACCA 968316 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | |||| |||| || || || ||||||| || || || | || || | |||||| Sbjct 968317 TCACAGCTGCCCACTTCTGGAAGTTCCCATCCCCTGCAGGTCTGGTCTCCACAAGCTCTG 968376 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || || | ||||| ||||| | | ||| || | | | || || || || || | Sbjct 968377 TGTCCTGGGTTAGCTCTTCCCCGTCCCACTGCCAGGTCAGTGTGATCTCCGCTGGGTAGA 968436 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| ||||||||||| Sbjct 968437 AGCCCAGAGCCCAGCACC 968454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629106143305640