Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 seq21 111 2e-19 seq10 109 7e-19 >seq25 Length=20042899 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || |||||||| |||| ||| || Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173 Query 37320 ACAAGACG 37327 |||| ||| Sbjct 6229174 ACAACACG 6229181 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| ||||| |||||||| |||||||||||||| ||||||| | ||||||| Sbjct 6231706 AAGTTTTCATTCACTATACCATCACTTGCTGCAAAGAAAGCTAGAACATGTGATATAAAA 6231765 Query 37623 TGTCTTTCATCA 37634 | ||| || ||| Sbjct 6231766 TATCTCTCCTCA 6231777 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 6227518 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 6227576 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 6227577 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6227610 >seq21 Length=21368495 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 10317097 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 10317038 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || |||||||||||||| |||||||| ||||| || || ||||| | Sbjct 10317037 TTAGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 10316978 Query 37318 CTAC 37321 | || Sbjct 10316977 CAAC 10316974 >seq10 Length=25572408 Score = 109 bits (120), Expect = 7e-19 Identities = 119/157 (76%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| ||| | ||||| ||||| ||||||||| ||||||| || || |||| ||| ||| Sbjct 5064970 AACATTAAGAAAGCAAACTCACAGTGTAAACCT-CATCTCTGCTAATAAATTAATTGGAA 5065028 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| || ||| ||| || | | | |||||| || |||||| ||| Sbjct 5065029 AATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAAGAACCA 5065088 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAA 37323 |||||||| |||| ||| | | || |||| ||| ||| Sbjct 5065089 GAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAA 5065125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592150144264360