Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq25 127 2e-24
seq21 111 2e-19
seq10 109 7e-19
>seq25
Length=20042899
Score = 127 bits (140), Expect = 2e-24
Identities = 105/128 (82%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || |||||||| |||| ||| ||
Sbjct 6229054 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCTTG 6229113
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| ||||||||||| |||
Sbjct 6229114 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 6229173
Query 37320 ACAAGACG 37327
|||| |||
Sbjct 6229174 ACAACACG 6229181
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622
||||||||||| ||||| |||||||| |||||||||||||| ||||||| | |||||||
Sbjct 6231706 AAGTTTTCATTCACTATACCATCACTTGCTGCAAAGAAAGCTAGAACATGTGATATAAAA 6231765
Query 37623 TGTCTTTCATCA 37634
| ||| || |||
Sbjct 6231766 TATCTCTCCTCA 6231777
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| ||||
Sbjct 6227518 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 6227576
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 6227577 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 6227610
>seq21
Length=21368495
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || |
Sbjct 10317097 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 10317038
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || |||||||||||||| |||||||| ||||| || || ||||| |
Sbjct 10317037 TTAGCCAGAATATGGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 10316978
Query 37318 CTAC 37321
| ||
Sbjct 10316977 CAAC 10316974
>seq10
Length=25572408
Score = 109 bits (120), Expect = 7e-19
Identities = 119/157 (76%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|||| ||| | ||||| ||||| ||||||||| ||||||| || || |||| ||| |||
Sbjct 5064970 AACATTAAGAAAGCAAACTCACAGTGTAAACCT-CATCTCTGCTAATAAATTAATTGGAA 5065028
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| || | || ||||| || ||| ||| || | | | |||||| || |||||| |||
Sbjct 5065029 AATGTGAGGCCAGGCATAAATCCTTGTTTCTTGAGCTAGAATATTAATGAAAAAGAACCA 5065088
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAA 37323
|||||||| |||| ||| | | || |||| ||| |||
Sbjct 5065089 GAAAAGAAGATACTTTCTATTCCTACAAAGGCTGCAA 5065125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592150144264360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |