Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq30 129 5e-25 seq107 96.9 3e-15 seq168 95.1 1e-14 >seq30 Length=19208098 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 15109594 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 15109535 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || ||||| || || ||||||||||| ||||| || || ||||| |||| | Sbjct 15109534 ACCCCCAGGCCCATATCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 15109475 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || ||||| || | || ||||| ||||| || ||||| Sbjct 15109474 ACATAGAACTGGCAAAGGGCATGGCAGGGAGGCAGTGCCAT 15109434 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 || ||||| || |||||||||||||| || || || || || || | ||||| |||| Sbjct 15106148 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTACTTCT 15106089 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | | ||| ||| ||||||||||||||| ||| || ||||| ||||||||||| Sbjct 15106088 CGGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAGATCTTC 15106029 Query 30280 ACCCCCTT 30287 || ||||| Sbjct 15106028 ACTCCCTT 15106021 >seq107 Length=10112982 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || || ||| ||| |||||||| ||| | ||| Sbjct 6826560 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATGCTTCTTGGGA 6826619 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| |||||||| ||||| || ||| Sbjct 6826620 ATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCT 6826667 >seq168 Length=7504001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/245 (72%), Gaps = 20/245 (8%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| |||| || || || || || ||||| |||| || || || ||| | Sbjct 3980905 ATGAGCTCCTTGTAGGGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTT 3980964 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCA-AGTCTTTCTACCCATTATCACCACGT 112198 || |||||||| ||| | || ||||||||||| ||||| |||||||| |||||||| | Sbjct 3980965 CAAAGGTCTATGCTTCTTGGAAATGGAGAACCAGGGTCTTCCTACCCATAATCACCACAT 3981024 Query 112199 TCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTT-AAAAT-CTT 112255 |||| || || ||| || ||||| | | |||| || || | | ||| ||||| ||| Sbjct 3981025 TCTGTTTACCATCT-ACGGAAGAAGATGTGGTCGTGG-TC---ATTCTTTGAAAATACTT 3981079 Query 112256 TGCAAAGTC--TC----GCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG- 112308 | || || || ||||| |||| | || ||||| || || | |||||||||| Sbjct 3981080 T---AATTCATTCCTGAGCAGG-GGCCAGGATAGGTCTCCATTCTTGCTGATGCCCATGT 3981135 Query 112309 TCTGG 112313 ||||| Sbjct 3981136 TCTGG 3981140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408505504572257