Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq460 178 2e-39 seq136 138 2e-27 seq183 96.9 6e-15 seq74 86.0 1e-11 >seq460 Length=2373103 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| || || | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 2175771 AGCAGCTGGCAACCGTTGCTGACGTGAGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 2175830 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || ||||| || ||||| || | |||||| |||||| Sbjct 2175831 TCCCGGAGGAGGCCGGCAGTGTTCGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 2175890 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| || |||||||| ||||| || ||| |||||||||||||| |||| Sbjct 2175891 TTGTCCTCCAGGCGTGCGATGCGCTCCAGCTTCCGCTTCCGGCATTTGGTGGCCGCCAGC 2175950 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| ||||| || ||||||| ||| || Sbjct 2175951 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATGTTGATGGGG 2176010 Query 241625 GAC 241627 ||| Sbjct 2176011 GAC 2176013 >seq136 Length=8360586 Score = 138 bits (152), Expect = 2e-27 Identities = 164/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| || |||||||| || ||||| | ||| | | | |||| | Sbjct 2510578 AGAACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCA--GACTAGCTGT-GGAC-GC 2510633 Query 241475 C--CTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTC 241530 | || ||| || | ||| |||| |||||| |||||||| || |||| |||||| || Sbjct 2510634 CAACTCCGTATTCTGGCTTTTGAGCGTCTTCACCTTCTCCTCAAGGCGCGAGATGCGCTC 2510693 Query 241531 CAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGC 241590 ||| |||||| |||||| |||| ||| || | |||||| || || | ||| |||||||| Sbjct 2510694 CAGCTTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGGCGCTTGCGTTCCGC 2510753 Query 241591 CTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||| ||||| ||||||||||| || ||| Sbjct 2510754 CTTGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 2510790 >seq183 Length=6917083 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 4785052 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 4785111 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | || ||| | ||||||||||| |||||||| |||||||||| Sbjct 4785112 GCTATGCGGTTCCTCATTCGCTTCCTCTCCGCCTTGATCCGTTCCTGTGACTCCATGTCG 4785171 Query 241619 ATCGGAGA 241626 || || || Sbjct 4785172 ATGGGGGA 4785179 >seq74 Length=12003515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 213543 TCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTG 213602 || |||||||||||||||||| ||| || ||||||||||| ||| ||| || || | Sbjct 11038520 TCCGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG-TTGCTCTTCCGATT 11038462 Query 213603 GCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 || ||||| |||||||||||||| |||| || |||||| ||| ||| Sbjct 11038461 ACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTGAGAC 11038413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931270701602560