Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq5 338 7e-88 seq184 187 3e-42 seq87 89.7 6e-13 >seq5 Length=32993971 Score = 338 bits (374), Expect = 7e-88 Identities = 674/987 (68%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | |||||| | | ||| || ||||| || Sbjct 9425182 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATTTGTGTCAAACTTATTGGC 9425123 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || |||| ||||||| || ||| || | ||| || || || || Sbjct 9425122 AAACAAGTGGTGT---TTGTGTAACATCCAGTTCAAGTCCCCTGCCCCAAAAACACACAC 9425066 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| | ||||| ||| || ||||| | || || || | || || ||||| Sbjct 9425065 AGAGCGCACGTGGATGCCGTCGCAGGGTGGGTAAGGGGCGCCCTTGGAAACATCGCCTTC 9425006 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | || ||||| || |||||||| || |||| |||||||| || |||| ||||||| Sbjct 9425005 AAAATAGTGCCATTTGACAAACCTTGCAATCGAATGCATGTCAGACATGTCATATTTGTG 9424946 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | ||| | ||||| || || | || || | || | ||||||||| || | ||| Sbjct 9424945 GCTTGAGGGCAGTGCACCAGGGACTTCAGGGATCCTTTGAATGGTGGCCCAGAGATATTC 9424886 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA---TTAACCTGTCCCG 160408 || |||||||| ||||| || | ||||||||| |||| | || || | | ||| Sbjct 9424885 ATCAGGGCTGTATGTGTCTTTCGCCCATTCCATAAACT-TGTGAATTTTTTCATTTCCT- 9424828 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || || | || ||| || | || ||||| || || ||||| || || || || Sbjct 9424827 -AGCACATATCCCACATAGTTCCTACTGACCACAAAATAGGCACTGCCTGAAAAAATGGG 9424769 Query 160469 TATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | | | ||| || || | |||||| || ||||| | || | || || | | Sbjct 9424768 TGTTTCGAGAGGAGGACGCAT-TTTGTCTGCTCCTGTGTTTGTCAGCTTCCCGTTGATGA 9424710 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGG-TGGCATGCGTTCCGTCTCTAGA 160586 | | ||||| |||||||| || |||| || || ||| || | || || Sbjct 9424709 CTTCATAACGCTTTTTCCACCTTTCC-TCTTTACTGGCTGACATTTTCTCAGATTCAAGG 9424651 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| |||| | ||| || |||| | ||||||| || ||||| || || | ||| Sbjct 9424650 TTGTTTTCACCCATTAACGACTTGAGCTTCCTGACGATTTCCAGGTTGGTTTTAATAGGA 9424591 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 || || | || || | ||||||| ||||||||| | || |||| || |||||| Sbjct 9424590 AAATCCATGCCACAAAGATTTATCAAGTACTTCCAGTCTGCACTCATTCTGTAGAGGTCC 9424531 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 |||||||||| | |||||||| ||||||||||| ||||| ||||| || ||||| || Sbjct 9424530 TTCATGCAATTGAGGTCTGCCTGGACGCGGCTCCATGAAGCATACACCACATTCTCCAGC 9424471 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC-CAGAAAGAA 160825 ||||| |||||||||||| |||||| || | || |||| || || | ||| | Sbjct 9424470 CGGCTGGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATTACAGCACCTAAAAAG 9424411 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 | | | || | |||| |||||| || | |||||| | ||||||||| ||||||||| Sbjct 9424410 GAAC-TGTCGGACTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGC 9424352 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| || | ||| |||| ||| || || || || || | ||| ||||| || || | ||| Sbjct 9424351 CCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACCACTATAGAATATGCGAGCGG 9424292 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | ||| || || |||| | | ||| || ||| | ||||| ||| | Sbjct 9424291 AAACTCTGCCTCTTCTTTGCTAAGGGGTTCCACAATGTATTTGCGCTTTTTGATGAAAGA 9424232 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 9424231 TGTACAATCACCAGTCATGTTTATATA 9424205 >seq184 Length=6952770 Score = 187 bits (206), Expect = 3e-42 Identities = 240/330 (73%), Gaps = 1/330 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | |||||| || ||||| || || || || || |||||||||||| Sbjct 4689494 TAGAGGGTGAGGCAGGCTTTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCAC 4689435 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || || || ||||||| ||| |||||||| || |||| || |||| ||| Sbjct 4689434 ATGTAACACCCCTCATCCTCCAGGGTAGTATTCCAGAAGGTTATAGTGGAGTCATTGAGT 4689375 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 || | | ||| ||||| || | || ||||| ||| ||||| ||||| || | ||| Sbjct 4689374 CCGAGATACGTGATGTTTACCCTGTCCTTATAGCCAGGCTGAACCACAACCCCATTTTTC 4689315 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||| ||| |||| || || ||| | || |||||||| |||||||| || |||||| Sbjct 4689314 TTGCTGAATGTGACCATATTTTCTGGGTTTGTAGCCTTTATTTTCTGCCATGTCACTATC 4689255 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | | || ||||| |||||||| || ||||| | |||| ||| || ||| Sbjct 4689254 AAGACTTCCTGGTAAGTTTGCAGAGAACATCTTAGGGAAGCATGTGTGTGCAGAAGCTCT 4689195 Query 168450 CGCTCATCTTGAGTTACGACCTGTCCCTGT 168479 ||||| || || | || || |||||| Sbjct 4689194 ATTTCATCATGGGTCTCCACTTG-CCCTGT 4689166 Score = 141 bits (156), Expect = 1e-28 Identities = 172/234 (74%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| | ||||||| | ||| || ||||| |||| ||| || |||||||| ||| Sbjct 4692238 CCTTTGCTCACAGTTTGCCTGAAGTCAGTCACAGTCCCCAGATGCAGCACCTTGCAGATC 4692179 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 || || ||||| || ||||||| |||||||| || || | | ||| || ||| Sbjct 4692178 ACTTCC---TTTCCCACCTGACTCTCAGGATCTTTGACCTGCAGGACGCTGGTGACAGAG 4692122 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || |||||| | || | | | | ||||| |||||||||||||| || | |||| Sbjct 4692121 GTCGTCCCATTGGGGTGAGATAGACTCTCAGTGCTATTCTCAATCCCTGACCCAGTCACC 4692062 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 |||||| | |||| || || || || || |||||||| ||||| ||||||||| Sbjct 4692061 TTCCAGGAGATTATGGGGGCAGGGCGGGCAGTAGCAGAACAGGTGATATTTAAG 4692008 >seq87 Length=11199282 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || ||||||||||| | ||||| || |||| | || | Sbjct 1974726 AGATACCTTGCTAGCTCACCAGGAGAGTCATAATCTTCCACATGAATGAATGAATCTGCT 1974667 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | || | ||||| | | || Sbjct 1974666 GGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCC 1974607 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||| | |||||| || |||| |||||||||||||| | Sbjct 1974606 AGAAAAGCATTGTAGAGCTTTTCAGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAA 1974547 Query 176412 AAATAGAACTTACA 176425 | ||| || || || Sbjct 1974546 AGATAAAATTTGCA 1974533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577056792162840