Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq101 127 4e-24 seq139 100 6e-16 seq48 95.1 2e-14 seq662 87.8 4e-12 >seq101 Length=10068975 Score = 127 bits (140), Expect = 4e-24 Identities = 143/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || ||| |||| |||| ||| || |||||||||| Sbjct 9126725 CTTTTGA-ATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 9126667 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | |||||| |||||||| || |||||||| ||||| || || || |||||||| Sbjct 9126666 TCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTT 9126607 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||| | |||||| | ||| || || ||||| ||||| || || ||| ||||| | || Sbjct 9126606 CTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGGGTTTTTACAA 9126547 Query 192527 ATATCTGCAT 192536 | ||||| || Sbjct 9126546 AAATCTGTAT 9126537 >seq139 Length=8626845 Score = 100 bits (110), Expect = 6e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | || | |||||| |||||| || ||| Sbjct 1931035 ATACCACCCCTCAGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCA 1930976 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| || || || |||||||| | ||||| || ||||| Sbjct 1930975 GAAAGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 1930916 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || ||| || ||||| || | ||| | || Sbjct 1930915 GGAATGCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCGATGGTATCACTGGGCTCC 1930856 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || || |||| || || | || |||||||| || Sbjct 1930855 ACCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCATCTT 1930803 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || ||||| | || | || | || | |||||| |||||| || ||| Sbjct 1931263 ATACCACCCCTCAGACGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCA 1931204 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | |||||||| ||||| Sbjct 1931203 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGA 1931144 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | ||| | || Sbjct 1931143 GGAATACCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCC 1931084 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 1931083 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 >seq48 Length=15315231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||| | |||||| ||| || || ||||| | || ||| |||| ||| Sbjct 866994 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCC 866935 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||| ||||||||||| || ||||| || ||||| || || ||||| |||||||| Sbjct 866934 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGG 866875 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || ||||| || | || | |||||||| || || || || ||| Sbjct 866874 ATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTCTTA 866815 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || || | || ||||||||| Sbjct 866814 CCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq662 Length=1284721 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| ||| | || ||||| | || | | |||| |||| ||||| |||||||| Sbjct 539912 CTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCATCTTCCAGCTGTTTCCCAGCAAA 539971 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| || ||||| || ||||| || || ||||| |||||||| || || || ||||| Sbjct 539972 GATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTGACATT 540031 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | || | |||||||| || ||||||| |||| || | || || | Sbjct 540032 CTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATGGTCTTACTGGTCAGGGTCTTCAC 540091 Query 192525 AAATATCTGCATT 192537 ||| ||||||||| Sbjct 540092 AAAGATCTGCATT 540104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984196079352150