Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq330 104 7e-17 seq83 87.8 5e-12 >seq330 Length=3944073 Score = 104 bits (114), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| |||||||| || || ||||||| ||||||||||| Sbjct 2959746 ACCAGTCTCAGCAGTCTTGACAGCAGTATCAATAAGCCCCTCACGACCTCCCATAGCATG 2959805 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| || || || || Sbjct 2959806 GAAGAAGAACTCAGTGGGTGTGAGGCCGGCCAAGTAGGAGTTCTCCACAAAGCCGCGGCT 2959865 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| |||| | ||||| ||||| |||| || || | | || |||| Sbjct 2959866 CTCAGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTAAACCCAAATGG 2959925 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || || |||||||| || Sbjct 2959926 GATCCGCTTGCCCTCCACATTCTGCTGCCC 2959955 >seq83 Length=10940688 Score = 87.8 bits (96), Expect = 5e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | | ||| ||||| || |||||| Sbjct 5621888 GCTTCACCTGAGGACATTAAAAAGGCTTATCACAAAGTGGCACTTAAATGGCACCCTGAT 5621829 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAA-ATTCAAAGAGATTTCTCAAGCTTA 449005 ||||||||||| ||||||| ||| ||||| ||||| ||| ||||| | || |||| || Sbjct 5621828 AAAAATCCAGAAAATAAAGAAGAAGCAGA-GAGAAGATTTAAAGAAGTAGCTGAAGCATA 5621770 Query 449006 TGAAATTGTAACAAATAAAGAAAAA 449030 ||| | || ||||| | |||||| Sbjct 5621769 CGAAGTGTTATCAAATGATGAAAAA 5621745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471393132863533