Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq48 140 3e-28 seq662 134 1e-26 seq101 125 6e-24 seq163 91.5 1e-13 seq368 87.8 2e-12 >seq48 Length=15315231 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || || || |||||||| | | Sbjct 866786 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAGT 866845 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||| || ||||| || ||||| || || Sbjct 866846 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG 866905 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| |||||||||||||| ||| | | | |||| || || ||| Sbjct 866906 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACAAC 866965 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || |||||||| |||| ||| | ||||| Sbjct 866966 ATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 867012 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || ||||| || ||||| || |||||||| ||| Sbjct 865997 ATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAGT 866056 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| ||||| || ||||| || || Sbjct 866057 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCAG 866116 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||||||||||||||| ||| | | | | |||| || || ||| Sbjct 866117 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 866176 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 866177 ATCCAGAAAGAGTCCACTCTGCACCTGGT 866205 Score = 132 bits (146), Expect = 4e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 |||||||| | || || | |||||||| || || || || |||||||| ||| ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | || | || || ||||||||||||||||||||| || ||||| || || || Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAG 865891 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 | ||||||||||| |||||||||||||| ||| | | | | |||| || || ||||| Sbjct 865892 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATC 865951 Query 24887 CAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || ||| |||| Sbjct 865952 CAGAAAGAGTCCACTCTGCACCTGGT 865977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || ||||| || ||||| || |||||||| || Sbjct 865535 ACAATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCC 865594 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||||||| ||||| || ||||| || Sbjct 865595 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGAC 865654 Query 24821 CAACAACGTTTGATCTT 24837 || || | |||||||| Sbjct 865655 CAGCAGAGGTTGATCTT 865671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || |||||||| || ||||| || |||||||| ||| Sbjct 866225 ATGCAAATCTTCGTGAAGACCCTGACCGGTAAGACCATTACTCTTGAAGTAGAGCCCAGT 866284 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||| ||||| || ||||| || || Sbjct 866285 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 866344 Query 24824 CAACGTTTGAT 24834 || | ||||| Sbjct 866345 CAGAGGTTGAT 866355 >seq662 Length=1284721 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || ||| |||| || |||| || |||||||| || Sbjct 540106 ACAATGCAGATCTTTGTGAAGACCCTGACCAGTAAGACCATTAACCTTGAAGTAGAGCCC 540047 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||| || ||||| || ||||| || Sbjct 540046 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGAC 539987 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||| |||||||||||||| ||| | | | |||| || || Sbjct 539986 CAGCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGATGTACCCTGTCTGACTAC 539927 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAG 24929 |||| || || || || || || |||||||| || | ||| | |||| Sbjct 539926 GACATCCAGAAAGAGTCCACGCTGCACTTGGTCCTGAGCTTGAGGGGAG 539878 >seq101 Length=10068975 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||| ||||| ||| | ||||| |||| || || || || || ||||| || ||| || | Sbjct 9126536 GATACAGATTTTTGTAAAAACCCTAATGGGAAAGACCATAACTCTCGAGGTTGAACCCTC 9126595 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 9126596 AGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 9126655 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || || ||||| ||| | | | |||| || || || Sbjct 9126656 GCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAA 9126715 Query 24883 CATTCAAAAGGAATCGACACT 24903 |||||||||||||| ||||| Sbjct 9126716 CATTCAAAAGGAAT--ACACT 9126734 >seq163 Length=7758102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || |||||||| || || || || ||| ||| || || || || |||||||| ||| Sbjct 3427 ATACAGATCTTCATGAAGACCCTGACCAGTACGACAATCACCCTTGAAGTAGAGCCCAAT 3486 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGA----ATACCTCCCGA 24819 |||| | | | || || |||||||||||||||||||||| || ||| | Sbjct 3487 AACACCATTAAGAATGTCAAGTCAAAGATCCAAGACAAAGAAGGAAGGCATTCCTTGTCA 3546 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || || | ||||||||||| || ||||||||||| || | | | |||| || || Sbjct 3547 CCAGCAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAAATGGGCACACCCTGTCTGACTA 3606 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 3607 CAACATCCAGAAAGAGTCCACTCTGCACCTGGT 3639 >seq368 Length=3467158 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | | || || || || || || || || || ||| Sbjct 925144 GATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCAG 925203 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||| ||| || || || ||||| || || Sbjct 925204 TGACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACCA 925263 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| |||| || ||| |||| |||||| | | | |||||||| || Sbjct 925264 GCAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACAA 925323 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 ||| || || || || || || ||| ||| | | | ||||| |||| |||||| Sbjct 925324 CATCCAGAAAGAGTCCACCCTGCACCCAGTGCTACATCTCCGCGGTGGCGTCACTGAG 925381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449771015686520