Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq294 91.5 1e-13 >seq294 Length=4342603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 6409 TGATTGTAATAGCGGCTCATGGTGCGCATGTTCAGGCGGAAGATCTTCTGCGT-CTCCCG 6467 || ||||| |||| || || | | |||| | || | ||||| ||| ||||| |||| Sbjct 2712753 TGGTTGTAGTAGCCGCGCAGGTTCCGCAGGCTCTGCCGGAAAGTCTG-TGCGTTCTCCTT 2712811 Query 6468 CGCGTTCTTGTTCTGATCGGTCCAGTACTTCGTCTCGTTGGTCACGTTCCACGGCACGCT 6527 ||| || || |||| ||| |||||||| || | | | | | |||||||| | | Sbjct 2712812 GGCGATCCTGCTCTGCTCGTCCCAGTACTCCGGCCCCTCCTGCTCCATCCACGGCGCCCG 2712871 Query 6528 GGCGACCACCCGCGGGTCGGTGGAGTTGCTGTCGAAGCGGACGATCTCCGTGTCGTCCAC 6587 | ||| || ||| | | || || ||||||||| || ||||||| |||||||||||| Sbjct 2712872 CGGCTCCATCCTCGGATTCGCGGCGTCGCTGTCGAACCGCACGATCTGCGTGTCGTCCAC 2712931 Query 6588 GTAGCCCACGACCAGGTACCGGGG 6611 |||||| ||| | | | | ||||| Sbjct 2712932 GTAGCCGACGGCGATGAAGCGGGG 2712955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475907659745320