Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq48 123 2e-23 seq662 122 6e-23 seq113 107 1e-18 seq139 102 5e-17 seq368 98.7 6e-16 seq101 96.9 2e-15 seq163 86.0 4e-12 >seq48 Length=15315231 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 867012 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 866953 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| || || || || ||||||| | |||||||| | || Sbjct 866952 AGGGTACGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 866893 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || ||| ||||| || || || | ||| | | ||| | Sbjct 866892 ATGCCTTCCTTATCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTAGGCTCTA 866835 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| || ||||| || || |||||||| || ||||||||||| Sbjct 866834 CTTCAAGGGTGATTGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 866786 Score = 122 bits (134), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | ||||||||||| | ||| ||| ||||| ||||| ||||||| Sbjct 865997 TTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 865938 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| ||||| |||| ||||| || || || || ||||||| | |||||||| | | Sbjct 865937 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAG 865878 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || || ||||| | || ||| ||||| || || || | ||| ||| ||| Sbjct 865877 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 865820 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTG 34974 || |||| ||| || ||||| || || | |||||| || |||||||| Sbjct 865819 TACTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 >seq662 Length=1284721 Score = 122 bits (134), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34752 CTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATA 34811 |||||||||| |||||||||| ||| | ||| ||| ||||| |||| ||||| || | Sbjct 539878 CTCCCCTCAAGCTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACA 539937 Query 34812 GGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA 34871 || | | |||| ||||| || || || || ||||||| | |||||||| | || | Sbjct 539938 GGGTACATCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGA 539997 Query 34872 CCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGAC 34929 || ||||| || | || ||| ||||| || || || | ||| ||| ||| || Sbjct 539998 TGCCTTCCTTATCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTAC 540055 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| | | |||||||| | || |||||||| |||||||||||||| Sbjct 540056 TTCAAGGTTAATGGTCTTACTGGTCAGGGTCTTCACAAAGATCTGCAT 540103 >seq113 Length=9792114 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| ||||| ||| ||||| |||| | || || || || | |||| Sbjct 4493430 CAGCACCAGGTGCGTGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCATC 4493489 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||||| | || | || |||||||| |||||||| | || | ||||||||||| Sbjct 4493490 CTCCAGTTGTGTGCCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 4493549 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || || | ||| ||| || || | | || ||| Sbjct 4493550 TTGGATTTTGGCTTTGAC--ATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATG 4493607 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| |||||||||| ||| Sbjct 4493608 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTACAT 4493642 >seq139 Length=8626845 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||| ||||| | ||| ||| ||||| || || ||||| || Sbjct 1931032 CCACCCCTCAGACGAAGGACAAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAA 1930973 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| |||| ||||| || || ||||| || | |||||||| | || Sbjct 1930972 AGAGTGCGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1930913 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 1930912 ATGCCTTCTTTATCTTGGATCTTAGCCTTCAC--ATTCTCGATGGTATCACTGGGCTCCA 1930855 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || ||||||||||| ||||||||||| Sbjct 1930854 CCTCCAGGGTGATGGTCTTGCCTGTTAGGGTCTTTACGAAGATCTGCAT 1930806 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||| ||||| | ||| ||| ||||| || || ||||| || Sbjct 1931260 CCACCCCTCAGACGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAA 1931201 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | || ||||| | || Sbjct 1931200 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGA 1931141 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 1931140 ATACCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTATCACTGGGCTCCA 1931083 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 1931082 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931034 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || ||||| | ||| ||| ||||| ||||| ||||| || Sbjct 1931488 CCACCCCTCAGGCGAAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 1931429 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| ||||| ||||| || || ||||| || | || ||||| | || Sbjct 1931428 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGA 1931369 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 1931368 ATACCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTATCACTGGGCTCCA 1931311 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 1931310 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1931262 >seq368 Length=3467158 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 34773 GGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTT 34832 |||| | |||| ||| ||||| ||||| || || || || | || |||| || || | Sbjct 925349 GGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCT 925290 Query 34833 GCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTT 34892 || || | || ||||| || |||||||| | || | ||||||||| | | |||| Sbjct 925289 CTTTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTT 925230 Query 34893 TTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 | |||||| || || || | ||| ||| ||| || |||| || |||||||| || Sbjct 925229 TGGCTTTGAC--ATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCC 925172 Query 34951 CGTGAGGGTCTTTACAAAGATCTGCAT 34977 | | | |||||| |||||||||||||| Sbjct 925171 CTTCAAGGTCTTCACAAAGATCTGCAT 925145 >seq101 Length=10068975 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || | | | || |||| ||||||||||| || || ||| Sbjct 9126727 TCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAG 9126668 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||||| ||||| || | || | || ||||| || | || || || || | Sbjct 9126667 ATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 9126608 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | || || || || || | ||||||||||||||| | ||||| |||||| Sbjct 9126607 TCTATTGTATCTGAGGGTTCAACCTCGAGAGTTATGGTCTTTCCCATTAGGGTTTTTACA 9126548 Query 34967 AAGATCTGCAT 34977 || ||||| || Sbjct 9126547 AAAATCTGTAT 9126537 >seq163 Length=7758102 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| || ||| || || ||| Sbjct 3642 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATTT 3583 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA--CC--CCCTCCTT 34881 ||||| || ||||| || ||||||| | ||||||| || | || || || || Sbjct 3582 TCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTGACAAGGAATGCCTTCCTTCTTT 3523 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTT 34939 ||| | || ||| ||||| || || || | | ||||| ||| || |||| ||| Sbjct 3522 GTCTTGGATCTTTGACTTGAC--ATTCTTAATGGTGTTATTGGGCTCTACTTCAAGGGTG 3465 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| | | || |||||||| | |||||||| || Sbjct 3464 ATTGTCGTACTGGTCAGGGTCTTCATGAAGATCTGTAT 3427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325603453203071